Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13750 631 / 0 ZIFL1 zinc induced facilitator-like 1 (.1.2.3) AT5G13740 604 / 0 ZIF1 zinc induced facilitator 1 (.1) AT3G43790 545 / 0 ZIFL2 zinc induced facilitator-like 2 (.1.2.3) AT5G13940 82 / 3e-16 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024400 [exp] 609 / 0 AT5G13750 588 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.006G026200 [exp] 602 / 0 AT5G13750 572 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.010G248401 [exp] 211 / 5e-66 AT5G13750 144 / 2e-41 zinc induced facilitator-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034847 [exp] 656 / 0 AT5G13750 664 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033392 [exp] 653 / 0 AT5G13750 659 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037341 [exp] 647 / 0 AT5G13750 640 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033391 [exp] 643 / 0 AT5G13750 642 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033338 [exp] 636 / 0 AT5G13750 646 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10035766 [exp] 632 / 0 AT5G13750 622 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034794 [exp] 629 / 0 AT5G13750 645 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034846 [exp] 611 / 0 AT5G13750 600 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037425 [exp] 567 / 0 AT3G43790 687 / 0.0 zinc induced facilitator-like 2 (.1.2.3) Lus10000256 [exp] 322 / 1e-108 AT5G13750 318 / 3e-108 zinc induced facilitator-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.008G010600.5 pacid=42807407 polypeptide=Potri.008G010600.5.p locus=Potri.008G010600 ID=Potri.008G010600.5.v4.1 annot-version=v4.1 ATGGCAGAAGAGTATAGAGAGGCATTGTTGAAGAAGGATGATTACTATGAGAATTGCCCAGGATGTAAGGTTGATCAACTTAAAGAGTTGAAGAAAGGAT TCCCTTTTCGTGATCTTATTTCGATATGGATTGTTGTGCTTTGTACTGCACTTCCAATATCAACTCTCTTCCCATTCCTTTATTTCATGATTAGAGATTT TGGAATTGCTGAGCGAGAGGAAGATATTGGCTACTATGCTGGATATGTTGGGTCCTCATTTATGATTGGGAGAGCTCTAACTTCTGTTTTCTGGGGAATA GTAGCTGATCGCTATGGTCGAAAACCTGTTATACTTTTAGGGACCATCGCAGTGGTCATTTTCAATACTCTCTTTGGTCTTAGTGTGAATTTTTGGATGG CCATTATTACAAGATTTCTTCTTGGGAGTTTGAATGGTTTACTCGGACCAATAAAGGCATATGCAGTTGAGATTTTCAGGGCAGAATATCAAGCATTAGG ATTATCAACAGTTAGTACAGCATGGGGTCTAGGACTGATCATTGGCCCAGCTCTAGGAGGTTTCCTGGCTCAGCCAGCTGAGAAATATCCAAATTTATTT TCCAAGGAATCTCTTTTTGGGAGATTCCCCTACTTCTTACCCTGCTTCTGTATATCACTTTTCGCATTGGTGGTCACGATTGTTTCTTGCTGGCTTCCGG AAACTTTGCATGTGCACAATGAAAAGAAGACTTCATCCAATGATTCTTATGATGCTTTGGAAGCTGCAACCGGCGCATCTAAAGGAGACGAAACAAGAAC AGATGATAAAGGAAGGAAACCATCTTCTAATGAAAGCCTTCTAAAGAATTGGCCTTTGATGTCCTCCATCGTTGTCTATTGTATTTTCTCACTTCATGAC ATGGCTTACACAGAGATATTCTCATTATGGGCCGAAAGCTCTAGAAAACTTGGAGGCCTGGGCTATACAACAGAGGATGTTGGTGAAGTTCTTGCAATCT CAGGTTTCAGCCTTCTTGTCTTTCAACTTTCTCTGTATCCATTTGTGGAGAGGATTCTTGGACCGATACCAGTAGCTCAAATAGCAGCGGCCTTATCCAT ACTGCTACTGTCAAGTTACCCTTTTATAGCTATGTTATCCGGGCTCGGGCTCAGCATTTTGATAAATTGTGCATCTATAATGAAGAATGTTTTTTCTGTT TCAATTGTAACGGGCATGTTTATTCTGCAAAACAATGCTGTGGATCAAAACCAAAGAGGAGCTGCTAATGGCATTTCTATGACAGGAATGTCTCTTTTCA AGGCGGTCGGTCCAGCTGGGGGCGGCGCCATATTATCCTGGGCACAAAGGCGCCAAAATGCTGCATTTCTGCCAGGTGTGCAGATGGTTTTCTTCATCCT GAACGCGGTTGAATTAATTGGACTGCTGATGACCTTCAAACCTTTCCTGGCACAGAGACAAGACAAACCAAGAAACGGGACAGCCTAA
AA sequence Show only first row Show all	>Potri.008G010600.5 pacid=42807407 polypeptide=Potri.008G010600.5.p locus=Potri.008G010600 ID=Potri.008G010600.5.v4.1 annot-version=v4.1 MAEEYREALLKKDDYYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLYFMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGI VADRYGRKPVILLGTIAVVIFNTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLIIGPALGGFLAQPAEKYPNLF SKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNEKKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIVVYCIFSLHD MAYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQIAAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSV SIVTGMFILQNNAVDQNQRGAANGISMTGMSLFKAVGPAGGGAILSWAQRRQNAAFLPGVQMVFFILNAVELIGLLMTFKPFLAQRQDKPRNGTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150000 [exp]	1.00	0.9475
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	1.73	0.9300	Pt-RSH2.3
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	2.00	0.9315	PDS1.2
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	7.21	0.9255
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	7.48	0.8891
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	7.74	0.8642
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	7.74	0.9008
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	8.36	0.8771	Pt-VHA1.2
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	12.04	0.9024
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	12.12	0.8962	Pt-BMY.1

Compare expression of checked genes

Potri.008G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.