Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04990 400 / 3e-136 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) AT3G10730 377 / 2e-127 ATSUN2 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 2, SAD1/UNC-84 domain protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247900 [exp] 764 / 0 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034856 [exp] 497 / 3e-174 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Lus10028885 [exp] 490 / 2e-171 AT5G04990 426 / 2e-146 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Lus10008933 [exp] 486 / 1e-169 AT5G04990 428 / 5e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF07738 [poplar] [flax] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G010900.1 pacid=42806907 polypeptide=Potri.008G010900.1.p locus=Potri.008G010900 ID=Potri.008G010900.1.v4.1 annot-version=v4.1 ATGTCGGCTTCAACGGTGTCAATCACGGCTAATCCAGCGTCGGCAAGGCGGAGACCGGTGGTGGTTTCCGACAAGAAATCACCAAGCAACAACATCGAAT TAGTAGTTCCGAGTGAACGACGAATCAACGGTGGTGGAGGCGGAGATGACATTGTCACCGCCGCGGCGAGAAGGGATCTAAGTCATCACTCGATTCGAGG AGATGCGGTTCTGGAGTGGACGGCGAAAGATATTGTTCAAGTGAAGAAGACGAGTTCGACAATTTCGCCGCGGAGGGGGAGGAAGGTGGCTGCGACGAAG GCGAGGAGACCACTGTGGATGACGTTGGTGAGAGCTTTTACTAAGAATTTCGTGTTTTTGCTTGTTTTAGTAGGCTTAGTGCAGTTGGTTAGGAAATTGG CTGTGAAATCAGGGGATATTGATGGTGCTAGTGTGGGGACACAAATGGGGTTACGTGAGTTTGATGGGAGGATAGCGGAAATGGAGTCAATGGTGAAAAC TGCGGTGAAAATGATTCAGGTTCAAGTGGAAGTTGTTGACAAGAAGATTGAGAGTGAAGTTGGTGGGTTAAGGAGGGAAATGAGCAGGAAAATTGATGAT AAAGGTGTGATCTTGGAGGGAGAGTTGAGGAGGTTAGTGGAGAGAAGCGAAGGGTTGGAGAAGAAAATTGGGGAGTTGAAAGCGGGTGATTGGTTGTCGA AGGAGGATTTTGAGAAGTTCCATGAGCAGTTTAAGAAGGAAAATGGTGGGGAATTTGGTTGGAGTGGTGTGGGTTTGGATGACATAATGGCGTATGCGAG GGAGATAGTGCAGAAAGAGATTGATAAGCATGCGGCTGACGGGCTTGGGAGGGTGGATTATGCGCTGGCAACTAGTGGTGGAATGGTTGTGAAGCATTCT GATCCGTATATGGCCGTGAGAGGGGCTAACTGGTTCATGAAGGGTGGAGGGGTTCATCCGAATGCTGATGAGATGCTAAAACCAAGTTTTGGGGAGCCTG GGAAGTGCTTTGCTTTGAAAGGAAGTAGGGGGTTTGTCCAGTTTAAGCTGCGAAGTGCTATTGTTCCTGAAGCTGTTACGCTGGAACACATTGCTAAGAG TGTGGCTTATGATAGGTCAACTGCTCCTAAGGACTGTCAGGTGTCTGGGTGGATGCAGAACCCCGATCTTGATTCAGCAGATGACAAAGAGAAGATGTTT CTTTTAACAGAGTTTACTTATGACCTCGAGAAGAGTAACGCTCAGACCTTCAATGTATTGGACAAAACAGCCTCTGGACTTGTTGACACACTGAGGCTGG ACTTCACATCTAACCATGGAAACCCCTCACTCACCTGCATTTATCGCTTGAGGGTACATGGTTATGAACCTGATCGTGCTTCAATGACGGCAATGCAGCC TTGA
AA sequence Show only first row Show all	>Potri.008G010900.1 pacid=42806907 polypeptide=Potri.008G010900.1.p locus=Potri.008G010900 ID=Potri.008G010900.1.v4.1 annot-version=v4.1 MSASTVSITANPASARRRPVVVSDKKSPSNNIELVVPSERRINGGGGGDDIVTAAARRDLSHHSIRGDAVLEWTAKDIVQVKKTSSTISPRRGRKVAATK ARRPLWMTLVRAFTKNFVFLLVLVGLVQLVRKLAVKSGDIDGASVGTQMGLREFDGRIAEMESMVKTAVKMIQVQVEVVDKKIESEVGGLRREMSRKIDD KGVILEGELRRLVERSEGLEKKIGELKAGDWLSKEDFEKFHEQFKKENGGEFGWSGVGLDDIMAYAREIVQKEIDKHAADGLGRVDYALATSGGMVVKHS DPYMAVRGANWFMKGGGVHPNADEMLKPSFGEPGKCFALKGSRGFVQFKLRSAIVPEAVTLEHIAKSVAYDRSTAPKDCQVSGWMQNPDLDSADDKEKMF LLTEFTYDLEKSNAQTFNVLDKTASGLVDTLRLDFTSNHGNPSLTCIYRLRVHGYEPDRASMTAMQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	0	1
AT1G49870			unknown protein		Potri.001G296700 [exp]	1.41	0.9439
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	1.73	0.9587
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	4.47	0.9200
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	6.92	0.9428
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	9.00	0.8911
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	9.59	0.8967
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	9.94	0.8864
AT3G15550			unknown protein		Potri.003G058600 [exp]	11.31	0.9416
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	13.41	0.9046	Pt-ATJ6.1
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	14.49	0.9336

Compare expression of checked genes

Potri.008G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.