Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10720 744 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 729 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 525 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 499 / 2e-171 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 476 / 1e-162 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 391 / 3e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 380 / 2e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 371 / 2e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 371 / 2e-122 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G05620 368 / 8e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247700 [exp] 978 / 0 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.014G127000 [exp] 528 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 513 / 2e-177 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 514 / 3e-177 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 440 / 1e-148 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134600 [exp] 394 / 4e-131 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 389 / 2e-128 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 382 / 2e-126 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.018G051400 [exp] 382 / 8e-126 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028882 [exp] 755 / 0 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 743 / 0 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10015210 [exp] 485 / 3e-166 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 479 / 4e-164 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 454 / 6e-155 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 464 / 4e-152 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 397 / 6e-132 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 385 / 1e-127 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 382 / 3e-126 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 381 / 1e-125 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.008G011100.1 pacid=42806924 polypeptide=Potri.008G011100.1.p locus=Potri.008G011100 ID=Potri.008G011100.1.v4.1 annot-version=v4.1 ATGCAACACCCACCATTCTTGTTTCTCTTCCTTGCCTTTCTTTCCATCTTTTCACCTTTGTTAATCTCCTCTCAATCTCCACCACCACCACCACCGGTAC CACCACCACCACCACCGGTAGCACCACAATCGCCTTCCGATGCATGCAAATCCACCCTCTATCCTAAGCTTTGTCGTTCAATCTTAACAACATTCCCTTC ATCTTCTTCGAACCCTTATGAGTACAGCAAGTTTTCAGTCAAACAATGCCATAAACAAGCAAAAAGATTGTCTAAAGTTATAAACTATCACTTAACGCAC AAAAACCAACGTTCCAAGATGACCCATGAAGAGTTTGGTGCTTTACAAGATTGCCATGAGCTCATGGAACTCAACGTGGACTACTTTGAGACCATATCTA GTGAGTTGAAATCAGCCGAGTCAATGAATGATGTGTTGGTCGAGAGAGTCAAGAGTTTGCTCAGTGGGGTAGTGACCAACCAACAATCTTGCTACGACGG GTTGGTTCAGTCCAAGAGCAGCATTGCCAGTGCTCTGTCTGTGCCTCTCTCTAATGGCACTCGATTGTATAGTGTGTCTCTAGCCTTGGTCACACATTCA CTGGAGAAGAATTTGAAGAAGAAGAAGGGAAGAAAAGGGTCTCATCATCATGGAATCTTGACGAAGGGGGTTCGTGAACCACTGGAAACTCTTATCAAGG CTTTAAAGAGAACAGCATCCTGCCATAAATCAAGCAATTGCCACAGGGGAGAACGCATCCTTTCTGATGATTCTGGCGACGGGATTCTTCTAAATGATTC AGTGATTGTTGGCCCTTATGGCGCTGACAACTTTACAACCATTACAGATGCCATTGCATTTGCTCCAAACAGTTCAACACCTGAAGATGGTTACTTTGTG ATTTTTGTTAGAGAAGGGATTTATGAGGAGTATGTTGTGGTTCCCAAAAATAAGAAGAACATAATGATGATTGGAGAAGGGATTAATCGGACCATCATCA CGGGAAACCATAGTGTAATGGATGGCTGGACAACCTTTAATTCTTCGACTTTTGCTGTTTCTGGGGAGCGATTTGTGGGAGTATACATTACGTTCAGGAA CACGGCAGGTCCTCAGAAGCACCAAGCAGTAGCTCTGAGGAACAATGCTGATCTCTCCACTTTTTACCGGTGCAGCTTTGAAGGCTATCAGGATACTCTT TATGTGCATTCCTTGAGGCAATTCTACAGGGAATGTGATATATATGGAACTGTAGATTTCATTTTCGGAAATGCTGCTGCTGTCTTTCAGAACTGCAATT TATATGCTCGTAAGCCAATGCTTAACCAGAAGAATGCCTTCACTGCGCAAGGTCGTACTGATCCAAACCAAAATACTGGGATCTCCATTCAAAATTGCAC AATTGAGGCTGCACCTGATTTGGCTATGGACAAGAACTCGACAGGCAGTAACTCCACTTCGAACTTTTTGGGGCGACCTTGGAAGGTGTACTCTAGAACT GTGATCATGCAATCGTATATCGGAGAGCTGATTCAGCCAGCTGGATGGCTAGAATGGAATGGAACTGTTGGATTAGACACTATTTACTATGGTGAGTTTC AGAATTATGGGCCTGGTTCAAACACTAGCAGGAGAGTGAAATGGCCTGGTTATAATCTTATGAATGCTACGCAAGCTGCGAATTTTACTGTCTACAATTT AACAACGGGGGATACTTGGTTGCCTTACACTGACATACCCTTCTCTGGAGGACTACTTTGA
AA sequence Show only first row Show all	>Potri.008G011100.1 pacid=42806924 polypeptide=Potri.008G011100.1.p locus=Potri.008G011100 ID=Potri.008G011100.1.v4.1 annot-version=v4.1 MQHPPFLFLFLAFLSIFSPLLISSQSPPPPPPVPPPPPPVAPQSPSDACKSTLYPKLCRSILTTFPSSSSNPYEYSKFSVKQCHKQAKRLSKVINYHLTH KNQRSKMTHEEFGALQDCHELMELNVDYFETISSELKSAESMNDVLVERVKSLLSGVVTNQQSCYDGLVQSKSSIASALSVPLSNGTRLYSVSLALVTHS LEKNLKKKKGRKGSHHHGILTKGVREPLETLIKALKRTASCHKSSNCHRGERILSDDSGDGILLNDSVIVGPYGADNFTTITDAIAFAPNSSTPEDGYFV IFVREGIYEEYVVVPKNKKNIMMIGEGINRTIITGNHSVMDGWTTFNSSTFAVSGERFVGVYITFRNTAGPQKHQAVALRNNADLSTFYRCSFEGYQDTL YVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNLYARKPMLNQKNAFTAQGRTDPNQNTGISIQNCTIEAAPDLAMDKNSTGSNSTSNFLGRPWKVYSRT VIMQSYIGELIQPAGWLEWNGTVGLDTIYYGEFQNYGPGSNTSRRVKWPGYNLMNATQAANFTVYNLTTGDTWLPYTDIPFSGGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	1.00	0.9838
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	1.41	0.9823
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	1.73	0.9760
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	2.82	0.9703
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	3.46	0.9680
AT3G05220			Heavy metal transport/detoxifi...		Potri.005G120200 [exp]	3.87	0.9688
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203100 [exp]	6.00	0.9564
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	6.48	0.9673	Pt-PME.5
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.001G122100 [exp]	7.74	0.9497
AT5G45120			Eukaryotic aspartyl protease f...		Potri.015G113100 [exp]	8.30	0.9311

Compare expression of checked genes

Potri.008G011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.