Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10710 621 / 0 RHS12 root hair specific 12 (.1) AT5G04960 598 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 449 / 3e-152 ATPME1 pectin methylesterase 1 (.1) AT5G49180 417 / 6e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 407 / 1e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14300 412 / 4e-133 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G27870 404 / 6e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 396 / 7e-132 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 394 / 1e-130 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G53830 394 / 1e-130 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247600 [exp] 1026 / 0 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.003G072700 [exp] 491 / 1e-168 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 467 / 7e-159 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 451 / 2e-153 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.005G022900 [exp] 423 / 5e-142 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 419 / 4e-140 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 419 / 4e-140 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 414 / 7e-139 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 415 / 8e-139 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033399 [exp] 628 / 0 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 593 / 0 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10003934 [exp] 447 / 3e-150 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10038917 [exp] 406 / 6e-136 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 403 / 1e-133 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 396 / 9e-132 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 390 / 9e-131 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 393 / 4e-130 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037456 [exp] 382 / 2e-129 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10039314 [exp] 385 / 1e-127 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.008G011200.1 pacid=42808404 polypeptide=Potri.008G011200.1.p locus=Potri.008G011200 ID=Potri.008G011200.1.v4.1 annot-version=v4.1 ATGTCTTCTCTCAAAGCCTATGGCAAACTCGACGAGGCCGAGCAAGCACGGCTCGAGGCTCGTCGAAGAACCCGCAAAAGAATCACCATCATAAGCCTTT CTTCAATACTTCTTGTTGCCATTGTTGTTGCTGCTGTGGTGGGGACTCGTGCTGCTAGTGGAAACTCAAAGAAGGGTGGAGCTGATAAGTCAATTTCCAC ATCAGTCAAAGCTGTTTGTGATGTCACATTGTATAAGGATTCTTGTTACAATAACCTTGCTCCTGTGGCTAAACCAGACCAGCTCCAACCCGAGGAGCTT TTCAAATTGGCAATCCAAGTGGCCAAGAATGAATTGTCAAAAGCCTCTCAGCATTTCTCCAAGGATGGAGGGGTGCTTTACAATGGCGTCAAGGATAATA TGACAATTACAGCCTTGGAAAATTGCCAAGAGCTTTTGAGTTTGGCATTGGACCATCTTGATAACTCCTTGGAAGCAGGTCATGGTGTCAGTGTGATTGA TATTGTGGATGATCTAAGAACTTGGCTGAGTACTTCAGGCACTTGCTATCAAACATGCATTGATGGCCTTTCGGAGACAAAATTAAAGGCTACTGCTAAT GATTATCTCAAGAGTTCAAGTGAATTGACTAGCAATAGCCTGGCAATCATCACTTGGATCTCCAAGGTTGCAAGCTCAGTACTGAACATCCATAGGCGCT TATTGAATTACGAAGACCAAGAGATGCCCAAGTGGCAGCATCCAGAAGCTCGTAAACTGCTTCAAAGTTCAGATTTGAACAAGGCTGATGCTATCGTGGC TCAAGATGGGTCTGGAAAGTACAAAAGAATCACTGATGCCCTCAAAGATGTTCCTGAAAAAAGCGAGAAGAGGTATGTGATCTATGTGAAGAAAGGAATT TATTTCGAAAATGTTCGTATCGAGAAGAAGCAATGGAATGTTATGATGATTGGTGATGGAATGAACGCAACAATTGTATCTGCGAGCCTGAACGTTGTCG ACGGAACTCCTACATTCTCAACTGCAACATTTGCTGTGTTTGGGAAGGGATTCATTGCTAGAGATATGGGGTTCCGTAACACAGCCGGTGCAATCAAGCA TCAAGCAGTGGCCTTGATGTCAAATGCTGATATGTCGGCCTTTTACAGATGCAGCATGGATGCTTTTCAGGACACTCTCTACACACATGCGAATAGGCAA TTCTACCGTGAATGCAACATTTATGGAACAGTTGATTTCATCTTTGGAAACTCAGCTGTTGTCATTCAAAACAGCAACATACTACCCAGGAAACCCATGG AAGGCCAACAGAACACCATCACTGCACAAGGCAGGATTGACCCTAATCAAAATACTGGAATTTCAATTCAGAACTGTACCATCTTGCCTTTTGGCGACTT GAGTTCTGTCAAGACTTACCTTGGCCGACCTTGGAAGAATTACTCAACAACTGTATTCATGCGTTCGATGATGGGGAGCTTGATCGACCCTGCTGGATGG CTGCCATGGATAGGAGATACAGCACCTCCTACCATATTCTACACTGAATTTGAGAATTTCGGGCCTGGTGCTTCAACAAAGAACAGGGTTAAATGGAAGG GCTTGAAAACCATTACCAATAAACAAGCTAGTAAATTTACAGTGAAGGCATTCATCCAGGGAGAAGGGTGGCTCAAAGGCACTGGTATTAGCTACAAACC TGGTCTCTGA
AA sequence Show only first row Show all	>Potri.008G011200.1 pacid=42808404 polypeptide=Potri.008G011200.1.p locus=Potri.008G011200 ID=Potri.008G011200.1.v4.1 annot-version=v4.1 MSSLKAYGKLDEAEQARLEARRRTRKRITIISLSSILLVAIVVAAVVGTRAASGNSKKGGADKSISTSVKAVCDVTLYKDSCYNNLAPVAKPDQLQPEEL FKLAIQVAKNELSKASQHFSKDGGVLYNGVKDNMTITALENCQELLSLALDHLDNSLEAGHGVSVIDIVDDLRTWLSTSGTCYQTCIDGLSETKLKATAN DYLKSSSELTSNSLAIITWISKVASSVLNIHRRLLNYEDQEMPKWQHPEARKLLQSSDLNKADAIVAQDGSGKYKRITDALKDVPEKSEKRYVIYVKKGI YFENVRIEKKQWNVMMIGDGMNATIVSASLNVVDGTPTFSTATFAVFGKGFIARDMGFRNTAGAIKHQAVALMSNADMSAFYRCSMDAFQDTLYTHANRQ FYRECNIYGTVDFIFGNSAVVIQNSNILPRKPMEGQQNTITAQGRIDPNQNTGISIQNCTILPFGDLSSVKTYLGRPWKNYSTTVFMRSMMGSLIDPAGW LPWIGDTAPPTIFYTEFENFGPGASTKNRVKWKGLKTITNKQASKFTVKAFIQGEGWLKGTGISYKPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.008G011200 [exp]	0	1
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.010G247600 [exp]	1.00	0.8951
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	8.94	0.8933
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128900 [exp]	11.48	0.8791
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026200 [exp]	12.24	0.8881
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.002G017900 [exp]	12.48	0.8780	ATEXPA11.2
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126300 [exp]	19.49	0.8661
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227200 [exp]	21.33	0.8764
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126250 [exp]	21.63	0.8594
AT1G71140			MATE efflux family protein (.1...		Potri.004G094900 [exp]	21.63	0.8672
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	21.67	0.8790

Compare expression of checked genes

Potri.008G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.