Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CMEIL2.2,EIN3D
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20770 559 / 0 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 542 / 0 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT1G73730 343 / 4e-110 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT5G65100 325 / 3e-103 EIL Ethylene insensitive 3 family protein (.1) AT5G10120 313 / 1e-99 EIL Ethylene insensitive 3 family protein (.1) AT5G21120 303 / 2e-95 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247500 [exp] 1073 / 0 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 669 / 0 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.004G197400 [exp] 649 / 0 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015900 [exp] 357 / 4e-115 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 353 / 2e-113 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G015966 [exp] 156 / 1e-43 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031817 [exp] 348 / 1e-111 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031245 [exp] 345 / 2e-110 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 302 / 3e-95 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 288 / 1e-89 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [poplar] [flax] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Potri.008G011300.7 pacid=42807274 polypeptide=Potri.008G011300.7.p locus=Potri.008G011300 ID=Potri.008G011300.7.v4.1 annot-version=v4.1 ATGGGAATCTTTGAAGAAATGGGATTTTGCAACAATCTGGACTTTTTCTCGGCTCCTCCTGGAGAAATGGATGTGGTTCCAGAATGCGAACCAGAGGCAA CAATCGAGGAAGATTACAGCGATGAAGAGATGGATGTGGACGAGCTGGAGAGGAGGATGTGGAGAGACAGAATGTTGCTTAGGCGACTTAAAGAACAGAG TAAGAATACGGAAGTTGTTGATAATGCAAAACAGCGTCAGTCGCAGGAGCAAGCACGAAGGAAGAAGATGTCACGAGCGCAAGATGGTATCCTGAAATAT ATGCTGAAAATGATGGAAGTTTGCAAAGCTCAGGGTTTTGTGTATGGGATCATTCCTGAGAAGGGAAAGCCAGTGAGTGGAGCATCTGACAATCTCCGGG GATGGTGGAAGGAAAAAGTCAGGTTTGATCGGAATGGGCCTGCTGCTATTTCCAAGTATCAAGCAGACCATGCAATCCCTGGAAAGAGTGAAGATTGTGG TCCAGCAGCATCCACACCTCATACCTTGCAGGAACTTCAGGATACAACTCTTGGATCGCTTCTGTCAGCCCTGATGCAGCACTGTGATCCACCTCAGAGG CGTTTCCCCCTGGAGAAAGGTGTTGCCCCCCCATGGTGGCCCACTGGGAATGAGGAATGGTGGCCTCAACAGGGTTTGCCCAAGGATCAGGGTCCTCCTC CATACAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGTGTTCTAACAGCAGTGATTAAGCACTTGTCTCCTGATATTGCCAAGATTCGCAAGCT TGTTCGTCAGTCTAAATGTTTACAGGATAAAATGACTGCCAAGGAGAGCGCCACTTGGTTGGCAATAATTAATCAGGAAGAAGCACTGTCTCGAAAATTA TATCCAGATAGCTGCCTTCCCATGTCTGCTGGTGGAAGTGGTTCTCTTATCATCAGCGATTCCAGTGATTATGATGTTGAAGGAGTGGATGATGAACCCA ATGTTGAAGTAGAGGATTGCAAACCTCTTGATGTCAATCTTTTCAACATGGCAACAGCTGCTGGACCAAGAGATAGATTTATGATGCCGCCAGTGGCTCC ACAAATTAAGGGAGAACATGTTGAGACAAACATGAGTTTCATTCAGAAAAGGAAGCAGCCTGCTGGTGAGCCACATATGATGGTTGATCAAAAGATGTAT AGGTGCGAGTATCCTCAATGCCCCTACAATGATTCCAGATTTGGGTTTCTCGACGTCACTGCAAGAAATAATCACCAAATGAATTGCTCATACCGCACTA ACACTTCTCAGGGATTTGGAATGTCTAATTTCCAAATTAACAGTGACAAACCAGCTGTGTTTTCTCTCCCATTTCCCCAAACTAAGGCAGCAGCTCCAAA CCAGACCCCTTCATTTAACGTTTCAGGACTTGGACTTCCAGAAGATGGGAAAAAATCGATTTCTGATCTTATGTCTTTCTATGATACCAATCTTCAGCGA GACAAGAACATGAATCCTGGGAGTGCCAATGTTATCGGAGATCAAAATCAGCAGCAACTGCAAGAGCAGAAATTTCAATTCCATCTGGACCGCAGGAATG TCAATTTTATGGGGGACCAAAATCTGCAGCAGCAACAGCAACAACAGAAATTTCAGTTTCAGCTGGATTCTAGGAATGCTAATGTTATTGGTGGTCAAAA TCAACAGCAACAGCAGAAATTCCAATTTCAGCTTGATGATAGCTTCTATGGCCAAGGGGCTATAATGGGAAACAACATAACTGAAGTGACCAGCATGCCA GTGAACAGTTCTGCTTTCCCATCAACTGAAATGCAGTTTGATCACTGCAAGGCATTTGATTCTGCATTTGATGCCAATGTCAATGATAATGTTGCTGACT TCAGATTTGGCTCTCCGTTCACCATGCCACCAGTTGACTATTCCATGGATCCAATGCCAAAGCAGGATGCTGGCATGTGGTACGTCTAA
AA sequence Show only first row Show all	>Potri.008G011300.7 pacid=42807274 polypeptide=Potri.008G011300.7.p locus=Potri.008G011300 ID=Potri.008G011300.7.v4.1 annot-version=v4.1 MGIFEEMGFCNNLDFFSAPPGEMDVVPECEPEATIEEDYSDEEMDVDELERRMWRDRMLLRRLKEQSKNTEVVDNAKQRQSQEQARRKKMSRAQDGILKY MLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRGWWKEKVRFDRNGPAAISKYQADHAIPGKSEDCGPAASTPHTLQELQDTTLGSLLSALMQHCDPPQR RFPLEKGVAPPWWPTGNEEWWPQQGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHLSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALSRKL YPDSCLPMSAGGSGSLIISDSSDYDVEGVDDEPNVEVEDCKPLDVNLFNMATAAGPRDRFMMPPVAPQIKGEHVETNMSFIQKRKQPAGEPHMMVDQKMY RCEYPQCPYNDSRFGFLDVTARNNHQMNCSYRTNTSQGFGMSNFQINSDKPAVFSLPFPQTKAAAPNQTPSFNVSGLGLPEDGKKSISDLMSFYDTNLQR DKNMNPGSANVIGDQNQQQLQEQKFQFHLDRRNVNFMGDQNLQQQQQQQKFQFQLDSRNANVIGGQNQQQQQKFQFQLDDSFYGQGAIMGNNITEVTSMP VNSSAFPSTEMQFDHCKAFDSAFDANVNDNVADFRFGSPFTMPPVDYSMDPMPKQDAGMWYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	0	1	CMEIL2.2,EIN3D
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G259400 [exp]	4.69	0.8864
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	5.91	0.8772
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	9.00	0.8864
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	9.00	0.8845	Pt-ERD1.4
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.004G201400 [exp]	10.19	0.8686	Pt-NLP1.2
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	13.85	0.8789	Pt-LACS6.1
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Potri.001G170100 [exp]	15.49	0.8265
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.017G051700 [exp]	16.88	0.8159
AT4G03020			transducin family protein / WD...		Potri.014G136000 [exp]	17.32	0.8321
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	17.60	0.8625

Compare expression of checked genes

Potri.008G011300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.