Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 202 / 6e-58 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G12180 194 / 4e-56 CPK17 calcium-dependent protein kinase 17 (.1) AT5G04870 195 / 9e-56 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT1G50700 191 / 6e-55 CPK33 calcium-dependent protein kinase 33 (.1) AT4G23650 191 / 6e-55 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT5G19360 189 / 3e-54 CPK34 calcium-dependent protein kinase 34 (.1) AT3G20410 189 / 4e-54 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04740 189 / 4e-54 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT3G51850 186 / 5e-53 CPK13 calcium-dependent protein kinase 13 (.1) AT2G38910 187 / 7e-53 CPK20 calcium-dependent protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247400 [exp] 850 / 0 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.001G097400 [exp] 198 / 1e-57 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.010G244800 [exp] 199 / 2e-57 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.003G134000 [exp] 198 / 2e-57 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.016G066700 [exp] 199 / 3e-57 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.009G069200 [exp] 195 / 2e-56 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.008G014700 [exp] 196 / 3e-56 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.001G274700 [exp] 195 / 3e-56 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.006G200600 [exp] 192 / 1e-54 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033400 [exp] 693 / 0 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10034860 [exp] 692 / 0 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10017537 [exp] 202 / 2e-59 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10008958 [exp] 200 / 2e-58 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 201 / 1e-57 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10016200 [exp] 198 / 6e-57 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10000889 [exp] 197 / 7e-57 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10029346 [exp] 197 / 7e-57 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10014820 [exp] 195 / 1e-56 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10017911 [exp] 194 / 4e-56 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.008G011541.1 pacid=42808164 polypeptide=Potri.008G011541.1.p locus=Potri.008G011541 ID=Potri.008G011541.1.v4.1 annot-version=v4.1 ATGTATACGAGAAACAAGAAAACTTTAGATGAGTATCGAGTTTCTGACATCCTTGGAAGAGGTGGATTCTCAGTTGTCAGGAGAGGTATTATGAAGACAA GTGGAGATAGAAGGCAGGTAGCTATCAAGACATTGAAAAGATTAGGCCCATCAGCACCATCAGGAATTCCTCGGTCTCGCGGTGATGGTGAGAGAAGCTT TGCTTCGTTCAAATTTCCAACATGGAGGCAGGTTTCCGTATCCCATGCTTTACTTTCAAATGATATATTTGTTATGAGAAAGATAGTAGAAAATGTATCG CCGCATCAGAATGTGGTTGATCTCTATGATGTTTATGAAGATCAAAATGAGCTGTTTGACAGGATTGTCGCTCGAGACAAGTACTCCGAGCGTGATGCAG CAGCTGTAGTTAGGCAGATTGCAGAAGGATTGGGAGCTCTTCACAGGGCTAATATTGTTCCTAGAGACTTGAAGCCAGAGAACTGTCTTTTCTTGAATGA AAACGATGATTCTACCTTGAAGATCATGGACTTTGGATTGAGTTCTGTAGAAGAGTTCACTGATCCGGTTGTTGGGTTGTTTGGCTCCATTGATTATGTC TCACCAGAAGCTCTTTCTCAAGGCAGAATTAGCTCTAAAACTGATATGTGGTCTGTGGGAGTAATCTTGTACATCCTGCTCTCAGGGTATCCGCCTTTCA TTGCTCAGTCCAACAGGCAGAAACAAGTGATACTGGCTGGTGATTTCAGTTTCTATGAGAAGACATGGAAGAACATTACTTCATCAGCAAAACAACTGAT CACTGATCTCCTGCAAGTTGATCCGGAAAGGAGACCGAGTGCTCAAGATGTTCTAAATCATCCTTGGGTGATAGGGGGTTCTGCAAAAGAGGAACAAATG GACCCTGAGATTGTCTCAAGGCTGCAGAGTTTTAATGCCCGTCGCAAATTCCGTGCTGCAGCAATTGCCAGTGTGTGGAGTAGCACAATTTTCTTAAGAA CCAAAAAGTGTGCAAAAGGTGATAATGCTACTCTATCGGAATTCGAGGAGGTGCTGAAAGCAATGAACATGTCATCACTGATCCCTATGGCACCCCGCAT CTTCGATCTATTTGACAACAACCGTGATGGAACAGTTGACATGAGGGAGATACTTTGTGGTTTCTCCAGCCTCAGGAACTCTCGAGGAGATGATGCTCTC CGTCTGTGCTTCCAGGCTTTGCCCGAGAACTGCCTTCCAGCAGATATAACAGAGCCGGGGAAATTGGACGAGATATTTGATAGGATGGATGCCAGCAGTG ATGGAAAAGTCACCTTTGATGAGTTCAAAGCCGCAATGCAAAGAGACAGTTCACTTCAGGAGGTACTCCTCTCATCTCTTCGGCAACAATAA
AA sequence Show only first row Show all	>Potri.008G011541.1 pacid=42808164 polypeptide=Potri.008G011541.1.p locus=Potri.008G011541 ID=Potri.008G011541.1.v4.1 annot-version=v4.1 MYTRNKKTLDEYRVSDILGRGGFSVVRRGIMKTSGDRRQVAIKTLKRLGPSAPSGIPRSRGDGERSFASFKFPTWRQVSVSHALLSNDIFVMRKIVENVS PHQNVVDLYDVYEDQNELFDRIVARDKYSERDAAAVVRQIAEGLGALHRANIVPRDLKPENCLFLNENDDSTLKIMDFGLSSVEEFTDPVVGLFGSIDYV SPEALSQGRISSKTDMWSVGVILYILLSGYPPFIAQSNRQKQVILAGDFSFYEKTWKNITSSAKQLITDLLQVDPERRPSAQDVLNHPWVIGGSAKEEQM DPEIVSRLQSFNARRKFRAAAIASVWSSTIFLRTKKCAKGDNATLSEFEEVLKAMNMSSLIPMAPRIFDLFDNNRDGTVDMREILCGFSSLRNSRGDDAL RLCFQALPENCLPADITEPGKLDEIFDRMDASSDGKVTFDEFKAAMQRDSSLQEVLLSSLRQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.008G011541 [exp]	0	1
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	16.43	0.8427
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	18.11	0.9029
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	24.55	0.9022
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	25.21	0.9012
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	28.14	0.8812
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.013G056700 [exp]	29.79	0.8986
AT2G03430			Ankyrin repeat family protein ...		Potri.013G062000 [exp]	31.93	0.8966
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	32.31	0.8994
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	32.61	0.8993
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	35.56	0.8130

Compare expression of checked genes

Potri.008G011541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.