Plant FIBer expression Database

Potri.008G012000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50350 54 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G247100
[exp]
787 / 0 AT5G50350 55 / 1e-07 unknown protein
Potri.012G094200
[exp]
99 / 2e-21 AT5G50350 234 / 3e-69 unknown protein
Potri.015G091500
[exp]
90 / 1e-18 AT5G50350 229 / 1e-67 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034861
[exp]
391 / 5e-129 AT5G50350 58 / 1e-08 unknown protein
Lus10033401
[exp]
374 / 1e-122 AT5G50350 57 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G012000.1 pacid=42808535 polypeptide=Potri.008G012000.1.p locus=Potri.008G012000 ID=Potri.008G012000.1.v4.1 annot-version=v4.1
ATGGCAGTGGCAGCCTTTAAATCCACGTCAAGAAGAGCAACAACAACAAGTACAGCAACATCAGATAAAGAAACTTCAACAAAGCAGCACGCTTTACCAA
GAAAAACGGTACCTCCAAGAAGATCAAGAAGTGTGAGTGCAGTGTCAAGATCCCATCTTGTTGATACTTCAACAACAAGAACAGCAGCTGAAGGAACAGC
TACAGGGTCAACAAATTTATTGATCAAAAGAGACAACCCGCTTTACTGGAGCAATGTTTCCCCGCCTGATAAAGAAGTCGGTGAAGTTGTGGTTGATAAG
GAAGAGTCTAAGAGTGCACCCACAAAGCCAAATGTTGATGGTGATAGTAGGAGAGGGAGATCTGTGTCAAGAAAGGCTGATGCTGGAAAAAATGTTTCCG
GGATTGGTAGGAGTTTGTCCAGGGGTCCTGTTTCCAGAGGGAGGTCTGTGTCTCGGCCTCCTGGCTCTAGAGGCCATTTCGTGAATTCCGAGAGTGATGC
TGAACGAGAAGGGAGTTCGTTGACGAAGTATAGAAATGGGAGTGGCGGTTTGAGTAGTGTGTCAGATGCTGGGAGAAATAGTGATTTAGCGAGGAGTTAT
GATTGTAAATTTGAGAAGATGAGAAGTTTTCCGATGCAATCAGATGGATCTGCTTCAGACTTGCCTTCTTTGCCCATTAGGAGTTGGGAAGATAAAGGTC
TGGGAAGCTCAATTTCAGAAGCTGAAGAGAGAACTATTAAAGCAGTTTTTGAACAAATGCAGTCATTCCAAGGGGATAATTTGGGAGATGGCACCTCTAG
TCGTATATATGAAACTGTTCGATCTGAAGTTAGACGTGCCATTGCTGACATCCAAAATGACTTGGAAAGTACTATCCGGAGGAGTAACACAACTGCTATT
GCATTGGCCAATGTGAATGATATTCCTCCTGATCTAGTCAACCCAAGTGCAGTTGAATTAGTTTTGGACATCAGAAGAGAATATGCCAAGAAGCTTGAGC
AGTCCCAGGAACGGGCAAGGAAGCTTCGAGCAGACCTTGCTGTCGAGGAGCACCGTGGCTTAGAGCTCAGTAGAATTCTGAAGGAAGTGCTTCCGCATCC
GAAGATGTCAAATGTGCAGAAACCCCGTGCTGGAAGAAAGTCCAGCATTGAAAGAAGTAAGGTGTCAAAACGATTAACAGATGAAGCCATGGCTTATTTT
GATGAATGTGTGTCGCTGTCAACATTTGATAGCTCTGACTTCTCATCGCCTGAGGATCCACCAATCAACTTAGTTGGTGTTGGTGATTGTGCATCCTTTT
CCCAGGAAAATTTTAACGCTGCAGCCAACTGCTATCTCAACAGTTTTGCTACCAGTAAACAGGAATTGGTTGGTACACATAGCCACGGTGCATCAGTGCT
GTCAACCACTGGCAGCTGCCAGGAGCCTGCTCTAGAGGAAGTCACTCTAAACAGCTCAGAAACACCAGACAGTCGGAGGTTGCAATTTTCTTTTGCTCAA
AAGCCAAATGATTCCATCGAACTTCAGCAAGATATTAGGAAGTATGTCAAAAGCTTTGAGAAAGACACAGAAAAACCTGCCATCAATTCAAAGATTTTAA
GATCAAACCACTTCGATCTGGATGAATATAATTTGCAGGCCTCGAGGCAAAACTTCTTATTTGACACGGTGTTCCTTAATAACAGAATCCAGTCAGGTAG
TGTGCTACTGTGCGACGGAGGCATGGGAGTTTCATTTTCACCCTTTGCTGCCGTAATCTAA
AA sequence
>Potri.008G012000.1 pacid=42808535 polypeptide=Potri.008G012000.1.p locus=Potri.008G012000 ID=Potri.008G012000.1.v4.1 annot-version=v4.1
MAVAAFKSTSRRATTTSTATSDKETSTKQHALPRKTVPPRRSRSVSAVSRSHLVDTSTTRTAAEGTATGSTNLLIKRDNPLYWSNVSPPDKEVGEVVVDK
EESKSAPTKPNVDGDSRRGRSVSRKADAGKNVSGIGRSLSRGPVSRGRSVSRPPGSRGHFVNSESDAEREGSSLTKYRNGSGGLSSVSDAGRNSDLARSY
DCKFEKMRSFPMQSDGSASDLPSLPIRSWEDKGLGSSISEAEERTIKAVFEQMQSFQGDNLGDGTSSRIYETVRSEVRRAIADIQNDLESTIRRSNTTAI
ALANVNDIPPDLVNPSAVELVLDIRREYAKKLEQSQERARKLRADLAVEEHRGLELSRILKEVLPHPKMSNVQKPRAGRKSSIERSKVSKRLTDEAMAYF
DECVSLSTFDSSDFSSPEDPPINLVGVGDCASFSQENFNAAANCYLNSFATSKQELVGTHSHGASVLSTTGSCQEPALEEVTLNSSETPDSRRLQFSFAQ
KPNDSIELQQDIRKYVKSFEKDTEKPAINSKILRSNHFDLDEYNLQASRQNFLFDTVFLNNRIQSGSVLLCDGGMGVSFSPFAAVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50350 unknown protein Potri.008G012000
[exp]
0 1
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.007G132900
[exp]
1.41 0.7688
AT2G32900 ATZW10 centromere/kinetochore protein... Potri.002G223600
[exp]
2.44 0.7616 Pt-ZW10.1
AT3G51820 PDE325, ATG4, G... PIGMENT DEFECTIVE 325, UbiA pr... Potri.016G119400
[exp]
6.70 0.7469
AT3G48260 WNK3 with no lysine (K) kinase 3 (.... Potri.012G086700
[exp]
21.26 0.6649 WNK3.2
AT1G79450 ALIS5 ALA-interacting subunit 5 (.1.... Potri.001G381500
[exp]
21.42 0.7171
AT1G59750 ARF ARF1 auxin response factor 1 (.1.2.... Potri.004G228800
[exp]
30.39 0.7152 Pt-ARF1.12
AT1G01950 AtKINUb, ARK2 Arabidopsis thaliana KINESIN U... Potri.014G070900
[exp]
35.70 0.7135
AT4G36630 EMB2754 EMBRYO DEFECTIVE 2754, Vacuola... Potri.007G025700
[exp]
36.33 0.7161
AT1G65430 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE... Potri.008G077100
[exp]
38.53 0.7150
AT4G00710 BSK3 BR-signaling kinase 3 (.1) Potri.014G082400
[exp]
44.27 0.6889

Potri.008G012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.