Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18440 168 / 3e-47 AtNUFIP nuclear FMRP-interacting protein, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246500 [exp] 479 / 2e-165 AT5G18440 202 / 1e-57 nuclear FMRP-interacting protein, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034863 [exp] 146 / 2e-38 AT5G18440 192 / 7e-55 nuclear FMRP-interacting protein, unknown protein Lus10033402 [exp] 117 / 1e-28 AT5G18440 144 / 8e-38 nuclear FMRP-interacting protein, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10453 [poplar] [flax] NUFIP1 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
Representative CDS sequence Show only first row Show all	>Potri.008G012250.1 pacid=42807888 polypeptide=Potri.008G012250.1.p locus=Potri.008G012250 ID=Potri.008G012250.1.v4.1 annot-version=v4.1 ATGGACCAAATGTCGCAAATCAGCAAGTGGAAGGGAACTCGCCTGCATTACAGCAAAGTGAGAAAGTTCCAATGCCTGCAATGGCTGCAAATGGAGCAAA GCCATTGCCTATTGCAACTCAGCAAGGGCAAGGGAACTCATCTGCGTCTCAGCAAAGTTGGAACTCGCAGCCCTCTACATACAATAGGTGGCAGTAACTT AAAAAACAATCGAAATAGAGGGCGATCACAATCAGGACACCAGAAATCTGATTTCAATTGCATGGATAATGGAAAGAGAAAGCTTGAGTTTTCTAATGAA CATGGCAGAAAAGGGAACGGCAATGAGAGGGTAGCAAAATTTGGTCGCACTGATCTTGCAGACCAAGCTACAGAAGAGAAAAGTAAACCTAGCAGAACTT TTTTTTACACGGAACAAGAAATCAAACAATGGCGTGAATCACGTAGGAAGCACTACCCAACAAAAATCAGCATCGAGAAGAAGCAGATGGAGGTTATTGA TAGAGAGGCCAACTTTCGTCACAAGCAACTCAAGGAGATTTTGGCAAAGCAGGCTGAGCTAGGAGTTGAAGTTGCAGAAATACCGCCAGACTATCTGTTA GATTCAGAGAAGCTAGGAGTTGAAGTTGCAGAAATACCACCACCACAGGTGTTAAATTCAGAGAAACTAGGAGTTGAGGTTGCAGAAATACCACCACCAC AGGTGTTAAATTCAGAGAAACTAGGAGTTGAGGTTGCAGAAATACCACCACGGCATCTGTTAGATTCAGAGAAACAAGAGCATGGAAGGGAAGATAACAG AAGGTCCTTGACTAAGAAAGGGAAATTCTGGAACAAGCATGATAAAAGAGGAAGATTTAACAAAAAAGGTCGGTCAGCCAAGCAGGTTGGATCAGCAAAT GAAGAAAGGAAGCCAACACTATTGGAGAAGCTTCTGAGCACAGATATAAAGAGAGATAAGCGCCAATTGTTGCAGGTTTTTAGGTTCATGGTGGCGAACT CTTTCTTCAAGGATTGGCCAGAGAAACCTTTGAAATTTCCTTCAGTAGTGGTCAAAGAAGATGGTTATGAGGATGAGATTGTAGAAAAAAAATCCTCACT TGTCGGGGAGGAAGTTTCTGAAGACAGGAACAACACAATAGCTGAAAATTTTGGTGATAGAGATGACAACATCGAACATGATGCTCAAGTCGAGCTGGGG AATTGTTTTGTCAGGGGAAAATGTGATATTGTTGACGAAGTTGATAGGGTTGAAGAGGGAGAAATTGTTGACTAA
AA sequence Show only first row Show all	>Potri.008G012250.1 pacid=42807888 polypeptide=Potri.008G012250.1.p locus=Potri.008G012250 ID=Potri.008G012250.1.v4.1 annot-version=v4.1 MDQMSQISKWKGTRLHYSKVRKFQCLQWLQMEQSHCLLQLSKGKGTHLRLSKVGTRSPLHTIGGSNLKNNRNRGRSQSGHQKSDFNCMDNGKRKLEFSNE HGRKGNGNERVAKFGRTDLADQATEEKSKPSRTFFYTEQEIKQWRESRRKHYPTKISIEKKQMEVIDREANFRHKQLKEILAKQAELGVEVAEIPPDYLL DSEKLGVEVAEIPPPQVLNSEKLGVEVAEIPPPQVLNSEKLGVEVAEIPPRHLLDSEKQEHGREDNRRSLTKKGKFWNKHDKRGRFNKKGRSAKQVGSAN EERKPTLLEKLLSTDIKRDKRQLLQVFRFMVANSFFKDWPEKPLKFPSVVVKEDGYEDEIVEKKSSLVGEEVSEDRNNTIAENFGDRDDNIEHDAQVELG NCFVRGKCDIVDEVDRVEEGEIVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	2.00	0.9413
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	4.89	0.9221
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	6.32	0.9175
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	6.70	0.9130
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	8.77	0.8975
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	8.83	0.9084
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.006G279800 [exp]	8.94	0.8981
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	9.89	0.9050
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	9.94	0.9017
AT4G15820			unknown protein		Potri.008G222000 [exp]	10.90	0.8894

Compare expression of checked genes

Potri.008G012250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.