Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06390 577 / 0 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT2G35860 555 / 0 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT3G52370 552 / 0 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1) AT3G11700 541 / 0 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT5G05650 115 / 1e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244900 [exp] 705 / 0 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.006G200300 [exp] 587 / 0 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 576 / 0 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G008400 [exp] 473 / 3e-166 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 470 / 2e-165 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.012G006200 [exp] 468 / 1e-163 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G120800 [exp] 45 / 6e-05 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 44 / 0.0001 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 44 / 0.0002 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013604 [exp] 509 / 3e-179 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10029353 [exp] 489 / 4e-170 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10016194 [exp] 392 / 4e-134 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1) Lus10021247 [exp] 203 / 1e-60 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1) Lus10036111 [exp] 43 / 0.0003 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.008G012400.1 pacid=42806818 polypeptide=Potri.008G012400.1.p locus=Potri.008G012400 ID=Potri.008G012400.1.v4.1 annot-version=v4.1 ATGGCCATGGCGCCTTCACCTCCTTGCATCCACATTTTCTTCGCTTCTATTCTTCTTCTCTCAAATTTTCATCTGGGGTTCTCTTCTTCCTCCTCTACAT TGCAAGAGAACCATAGCAATGGGTCTTATTCAGGCCAAATCAACTCAAACTCAGTTCTTGTAGCTCTTCTTGACTCACATTATACAGAACTGGCTGAACT TGTTGAAAAGGCACTTCTTTTACAAACCCTTGAAGATGCTGTTGGTAAACACAACATCACCATCTTTGCTCCTAGAAATGAAGCTCTCGAACGTGATCTT GATCCCGAGTTCAAGCGGTTCTTGCTTGAACCTGGCAATCTCAAGTCTCTCCAGACTCTCCTACTTTATCACATTGTCCCCAACAGAATCAATCTCAGCC ATAACTCCTCTCTTCACCATCACAGCACCTTGTGCCGCGATAGAATCAAGCTCGGCAGTCAATCCGGCGAGAAGTTAATAGACTCGGCGAAAATCATTCA AGTGAATGCAGTGGAGAGGCCAGATGGCGTAATTCATGGGATTGAAAGGTTGCTAATCCCACGATCTGTTCAACAAGATTTCAACAATCGCAGGAGTTTG CAATCAATTTCAGCTGTGAAACCAGAAGGAGCACCAGAGGTTGATCCAAGAACACAAAGGTTGAAGAAACCAGCACCACCAGCAAAACCCGGTTCAGCCC CGGTCCTACCAATCTACGATGCAATGGCACCCGGCCCATCTCTTGCCCCGGCTCCAGCTCCTGGTCCAGGTGGACCTCATCACCATTTCAATGGAGAAAG ACAAGTTAAAGATTTCATTGAAACCCTTCTTTTGTATGGAGGATACAATGAAATGGCTGATATTCTTGTGAATTTAACATCATTAGCAACAGAAATGGGA AGATTAGTATCTGAAGGTTATGTGCTAACAGTTTTAGCCCCAAATGATGAAGCAATGGCTAAGCTCACAACAGACCAATTGAGTGAGCCAGGAGCACCGG AGCAGATAATCTATTACCATGTGATACCCGAGTATCAAACTGAAGAAAGCATGTACAATGCTGTTAGAAGATTTGGGAAGATTTCTTATGATACATTAAG ATTGCCACACAAAGTTTTGGCACAAGAAGCTGATGGGTCAGTGAAATTTGGACATGCTGAGAATTCTGCTTATTTGTTTGATCCTGATATTTACACAGAT GGAAGAATCTCTGTTCAAGGGATTGATGGGGTTCTGTTTCCATTAGAGGAGAAGGAGAAATCGGATACCAAGACGGAAATGAAGAGTGTTAAGGTTGCTG CTAAGCCGCAAAGGAGAGGGAAGTTGCTTGAAGTGGCTTGCAGGATGCTCGGGACATTTGGGCAAGATTCACATTTCACCACATGCCAGTAA
AA sequence Show only first row Show all	>Potri.008G012400.1 pacid=42806818 polypeptide=Potri.008G012400.1.p locus=Potri.008G012400 ID=Potri.008G012400.1.v4.1 annot-version=v4.1 MAMAPSPPCIHIFFASILLLSNFHLGFSSSSSTLQENHSNGSYSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEDAVGKHNITIFAPRNEALERDL DPEFKRFLLEPGNLKSLQTLLLYHIVPNRINLSHNSSLHHHSTLCRDRIKLGSQSGEKLIDSAKIIQVNAVERPDGVIHGIERLLIPRSVQQDFNNRRSL QSISAVKPEGAPEVDPRTQRLKKPAPPAKPGSAPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIETLLLYGGYNEMADILVNLTSLATEMG RLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHAENSAYLFDPDIYTD GRISVQGIDGVLFPLEEKEKSDTKTEMKSVKVAAKPQRRGKLLEVACRMLGTFGQDSHFTTCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	0	1
					Potri.005G114500 [exp]	1.00	0.9576
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.005G065200 [exp]	1.41	0.9541
AT1G07120			unknown protein		Potri.009G073600 [exp]	2.00	0.9483
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	4.58	0.9438
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	5.47	0.9470	POPTRKOR2,KOR1.3
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	5.65	0.9348
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	5.74	0.9509
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.010G224200 [exp]	6.00	0.9386
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	6.00	0.9460
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	6.70	0.9418

Compare expression of checked genes

Potri.008G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.