Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAP7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10670 447 / 7e-159 ABCI6, ATNAP7 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) AT5G06530 61 / 3e-10 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G37010 61 / 4e-10 ATNAP12 non-intrinsic ABC protein 12 (.1) AT4G33460 60 / 4e-10 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT1G53270 57 / 6e-09 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT5G14100 56 / 8e-09 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT5G60740 54 / 8e-08 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT4G19210 53 / 2e-07 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) AT1G63270 52 / 2e-07 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT3G52310 52 / 3e-07 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245000 [exp] 92 / 1e-22 AT3G10670 69 / 2e-14 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Potri.003G169000 [exp] 65 / 3e-11 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 64 / 5e-11 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.010G225200 [exp] 63 / 1e-10 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G062800 [exp] 61 / 2e-10 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.010G131900 [exp] 56 / 1e-08 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.011G094650 [exp] 55 / 4e-08 AT3G13220 743 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.018G110200 [exp] 53 / 6e-08 AT1G63270 387 / 2e-138 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Potri.001G058900 [exp] 54 / 7e-08 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034152 [exp] 436 / 1e-154 AT3G10670 428 / 2e-151 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Lus10043429 [exp] 434 / 8e-154 AT3G10670 428 / 3e-151 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Lus10037981 [exp] 67 / 7e-12 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038714 [exp] 66 / 2e-11 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023199 [exp] 57 / 8e-09 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10022692 [exp] 55 / 1e-08 AT1G63270 403 / 8e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10023020 [exp] 57 / 2e-08 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10006727 [exp] 54 / 2e-08 AT1G63270 404 / 3e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10023139 [exp] 54 / 7e-08 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10000737 [exp] 54 / 8e-08 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.008G012500.8 pacid=42806743 polypeptide=Potri.008G012500.8.p locus=Potri.008G012500 ID=Potri.008G012500.8.v4.1 annot-version=v4.1 ATGGCCTTACGCTTCACTCTCTCCTCCCCTTCTCCCTCTCTACAGCCACCACTCATCCATTCTCCTCCTCCGCTTAAACTTTCAACTCTGCCCCTTAATT CAAACTTATTCACATATTCTGCCACTCGCTCTCTCCGTCTCCGCTCCACCCGCCGTCTTCCTGCAGTCACTGCCTCTGTCCCTGCCGTAGAAACCACAGG GACTACCGGAACCGATTCAGGGAAGAAAAGGCCGTTGCTGGAAGTCAAGGATTTGACCGCTGTGATTGCTGAGTCGAAACAGGAGATTCTCAAAGGCGTC AACGTTGTCCTTTACGAAGGAGAGGTTCATGCTATTATGGGAAAAAATGGGTCTGGTAAGAGCACATTTTCAAAGGTTCTTGCTGGGCATCCGGATTATG AGGTAACTGGAGGGAGTGTAGTGTTTAAAGGGGAGAACTTGCTTGACATGGAGCCAGAAGAAAGGTCACTTGCTGGGCTTTTTATGAGTTTTCAGTCACC AGTTGAGATTCCTGGTGTTAACAATATTGATTTTCTTAATATGGCTTATAATGCGCGGAGACGGAAACTCGGTCTGCCTGAACTTGGACCTATCGAGTTC TATGCGTATTTGTTTCCAAAACTTGAGCTTGTGAACATGAAGAGTGATTTTCTTAATAGAAATGTGAATGAAGGGTTCAGTGGTGGTGAAAGAAAGCGGA ATGAGATTTTACAACTTGCGGTTTTGGGTGCAGAATTGGCTATATTAGATGAAATTGATTCTGGGTTGGATATCGATGCCCTTCAAGATGTAGCAAAAGC AGTGAATGGGATGTTGACCCCGAACAATGCTGTTTTGATGATTACTCATTATCTACGGCTTCTGGAATTCATCAAGCCCACGTGCATTCATATCATGGAG AATGGCAGAATTGTAAAAACCGGTGATATTTCCATAGCAAAGACACTTGAGAAGGAAGGTTACAAAGCAATCTCTGCCTCTTAA
AA sequence Show only first row Show all	>Potri.008G012500.8 pacid=42806743 polypeptide=Potri.008G012500.8.p locus=Potri.008G012500 ID=Potri.008G012500.8.v4.1 annot-version=v4.1 MALRFTLSSPSPSLQPPLIHSPPPLKLSTLPLNSNLFTYSATRSLRLRSTRRLPAVTASVPAVETTGTTGTDSGKKRPLLEVKDLTAVIAESKQEILKGV NVVLYEGEVHAIMGKNGSGKSTFSKVLAGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVEIPGVNNIDFLNMAYNARRRKLGLPELGPIEF YAYLFPKLELVNMKSDFLNRNVNEGFSGGERKRNEILQLAVLGAELAILDEIDSGLDIDALQDVAKAVNGMLTPNNAVLMITHYLRLLEFIKPTCIHIME NGRIVKTGDISIAKTLEKEGYKAISAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	0	1	NAP7.2
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Potri.013G078600 [exp]	1.41	0.9794
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	3.46	0.9732
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	5.65	0.9593
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	6.16	0.9629	OHP2.1
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	6.78	0.9619
AT2G44870			unknown protein		Potri.004G030100 [exp]	8.12	0.9731
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	8.60	0.9585
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	9.79	0.9653	NAP6.2
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	10.00	0.9717
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	12.36	0.9665

Compare expression of checked genes

Potri.008G012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.