Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35840 547 / 0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) AT1G51420 515 / 0 ATSPP1 sucrose-phosphatase 1 (.1) AT3G54270 491 / 2e-173 sucrose-6F-phosphate phosphohydrolase family protein (.1) AT3G52340 458 / 3e-160 ATSPP2, SPP2 SUCROSE-PHOSPHATASE 2, sucrose-6F-phosphate phosphohydrolase 2 (.1.2.3) AT4G10120 47 / 2e-05 ATSPS4F Sucrose-phosphate synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066100 [exp] 572 / 0 AT2G35840 624 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.006G199800 [exp] 570 / 0 AT2G35840 633 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012284 [exp] 536 / 0 AT5G06530 802 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10015995 [exp] 533 / 0 AT2G35840 602 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Lus10005654 [exp] 68 / 4e-14 AT2G35840 79 / 2e-18 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF08282 [poplar] [flax] Hydrolase_3 haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF08472 [poplar] [flax] S6PP_C Sucrose-6-phosphate phosphohydrolase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G013300.1 pacid=42808562 polypeptide=Potri.008G013300.1.p locus=Potri.008G013300 ID=Potri.008G013300.1.v4.1 annot-version=v4.1 ATGGATCGGCTTGATGGTTCTGCGCATCTCATAATAGTGTCAGATCTTGATTTTACAATGGTGGATCATCTTGATCCTGACAACCTAGGCCTTCTTAGAT TTAATGCTATGTGGGAAGCCTACTACCGTCAAGATTCTCTGCTAGTTTTCTCCACCGGAAGGTCACCCACAATTTATAAACAGTTGAGGAAGGAGAAACC TTTGTTGACCCCAGATATAGCCATAATGTCTGTTGGAACTGAAATTATGTATGGTGAATCAATGATAAGAGATGAGGACTGGGAACAATATTTAAATAAA AATTGGAACAGGGAAATAGTCACAGAGGAAACAGCCCAGTTTCCAGAACTTACTCCTCAGTCTGAAACAGAGCAACGGCCTCATAAAGTGAGTTTTTTTG TGGAGAAGATAAAAGCCTTGAAAGTTATAAGGTCTCTATCAGAACGTCTAGAGAAGCGTGGGTTAGATGTTAAACTGGTATACAGTAATGAGACGGCTTT GGATGTATTACCAAAAGGTGCTGGCAAAGGACAGGCTCTTGCTTATTTGCTTGAAAAATTTAAAGTTGATGGGAAGATGCCAGTTAACACTCTTGTCTGT GGTGACTCTGGTAATGATGCTGAACTATTCAGCGTCCCTGAAGTATATGGTGTGATGGTCAGCAATGCACAGGAGGAATTGCTGCGGTGGCATGCAGAAA ATGCAAGGAACAATCCTAATATAATTCATGCAACAGAGAGATGTGCAGCTGGGATAATACAAGCCATCGGTAATTTTAGTCTGGGTCCAAATGTTTCTCC AAGAGATATTAGAGACTTTCAGAAATGCAAAGTGGAAATTTTCAGTAGTGGTCATGAAGTTGTGAAGTTTTATTTGTTCTATGAGAGATGGAGACGTGCA GAAGTTGCCAAGAATATGCAAACTCCAAAGTTAATATTTTTTCCATTGGGTACATTTGTGCATCCTTCAGGAGTTGAGCAACCAGTCAACCACTGCATAG ATGTAATGGCAAGGTTGCATGGGGACAAGCAAGGAACCAATTATCGCATATGGGTAGATCGAGTTTCTTCAGCACAAGTTGGTTCAGACACATGGCTTGT GAAGTTTTATAAATGGGAGTCATTTGGGGAGGAACGGCTTGGCTGTTTGACCACTGTCTTGCTAAGTTCAAAGGCCAATGTACCTGATGGCTTCACATGG ATGCACATGCATCAGACATGGCTAGAAGGTTCAGAACCTAAAGATCAAACAACCTGGTTATTCTAG
AA sequence Show only first row Show all	>Potri.008G013300.1 pacid=42808562 polypeptide=Potri.008G013300.1.p locus=Potri.008G013300 ID=Potri.008G013300.1.v4.1 annot-version=v4.1 MDRLDGSAHLIIVSDLDFTMVDHLDPDNLGLLRFNAMWEAYYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDIAIMSVGTEIMYGESMIRDEDWEQYLNK NWNREIVTEETAQFPELTPQSETEQRPHKVSFFVEKIKALKVIRSLSERLEKRGLDVKLVYSNETALDVLPKGAGKGQALAYLLEKFKVDGKMPVNTLVC GDSGNDAELFSVPEVYGVMVSNAQEELLRWHAENARNNPNIIHATERCAAGIIQAIGNFSLGPNVSPRDIRDFQKCKVEIFSSGHEVVKFYLFYERWRRA EVAKNMQTPKLIFFPLGTFVHPSGVEQPVNHCIDVMARLHGDKQGTNYRIWVDRVSSAQVGSDTWLVKFYKWESFGEERLGCLTTVLLSSKANVPDGFTW MHMHQTWLEGSEPKDQTTWLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	3.74	0.7651	Pt-CYCD1.3
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	5.29	0.7018
AT4G30400			RING/U-box superfamily protein...		Potri.006G176700 [exp]	5.47	0.7206
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	5.47	0.7504
AT5G44450			methyltransferases (.1)		Potri.011G157500 [exp]	8.12	0.6750
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G179700 [exp]	8.94	0.6945
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	9.59	0.6337
AT4G15080			DHHC-type zinc finger family p...		Potri.006G020800 [exp]	10.95	0.6793
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	12.12	0.7390
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	13.07	0.6824

Compare expression of checked genes

Potri.008G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.