Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04890 44 / 5e-05 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245600 [exp] 350 / 5e-122 AT5G04890 48 / 3e-06 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.008G014000 [exp] 91 / 7e-21 AT3G10680 84 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 42 / 0.0003 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008426 [exp] 44 / 5e-05 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G013900.1 pacid=42807756 polypeptide=Potri.008G013900.1.p locus=Potri.008G013900 ID=Potri.008G013900.1.v4.1 annot-version=v4.1 ATGGACCAAGGTAAACCTACCCAATCGCGATCGCTTTTTTTACCGAAAACGGAACGGATAGAGGAAGATGAAGCTCTTACGTTGCATGTTCATCTACCTG GTTTTGCTGAGAAGCATATAGATTGTAGGATAGTTGCACCATCACATTATATCAGAGTCTGTAGTAATCCCGCACTTAAAAACTGGCACTTCGATACACT TTTCGAGGATATTCCTGAAAAATTTAACCTCTATGAAGCAAAAACCAAATTTGATGATGAAACTCTAACCATCAGAGTTCCAAAAGTAATTCCTGCTCAA GCTAGTACTGGTGCATTAGAGGCCCCAACAAGACAGGAAGCTCCAAGCCTACAAGAAAGTAATACAAGCAGGTTAGGGCCTGAAATGAGTGGAGATGGTA CTGCAAGACAACAAACTGTGGATAAAGAAATTATAGAAACCAAAGGTGTTGAAGGTGGAAAAAGCATGAGCGAATGGATGTCTCAAAAGGGTCAAGATCA AATTCCTTCAAAAGCTAATTTCCCATTAGCATTTACCAGAAAGCTGCAAGTAGATGATCAAAGCACTATAGGACAGGTTGGTGATCAAAAGGAAGAGGAG AAGAGTGGTGAAAGTGTTAATCAAGAGAAGGAAGGGGAGGTAAAGGATATGGAGAATGCAAGTTCTTCTTCTGGAACGTCTGTGAATCACAATGTAACAA GGGGGGTGACTGCAAGGCTATATATAGTAGATAAATTCACCATACTCTCTTTGATCCTGGCAATTGGAGCTTATGTATTCTATACCATCTATGGCCAATC TAGAAAGAAGGCAGAATGA
AA sequence Show only first row Show all	>Potri.008G013900.1 pacid=42807756 polypeptide=Potri.008G013900.1.p locus=Potri.008G013900 ID=Potri.008G013900.1.v4.1 annot-version=v4.1 MDQGKPTQSRSLFLPKTERIEEDEALTLHVHLPGFAEKHIDCRIVAPSHYIRVCSNPALKNWHFDTLFEDIPEKFNLYEAKTKFDDETLTIRVPKVIPAQ ASTGALEAPTRQEAPSLQESNTSRLGPEMSGDGTARQQTVDKEIIETKGVEGGKSMSEWMSQKGQDQIPSKANFPLAFTRKLQVDDQSTIGQVGDQKEEE KSGESVNQEKEGEVKDMENASSSSGTSVNHNVTRGVTARLYIVDKFTILSLILAIGAYVFYTIYGQSRKKAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	0	1
AT2G27300	NAC	NTL8, ANAC040	Arabidopsis NAC domain contain...		Potri.009G161300 [exp]	1.00	0.9680
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	1.73	0.9542
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	2.00	0.9579
AT4G31980			unknown protein		Potri.013G146600 [exp]	6.63	0.9399
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	10.09	0.9294
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	12.32	0.9539
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	13.85	0.9441
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	15.00	0.9458
AT3G20600		NDR1	non race-specific disease resi...		Potri.004G023400 [exp]	16.15	0.9426
					Potri.001G444350 [exp]	16.30	0.9256

Compare expression of checked genes

Potri.008G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.