Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04895 1834 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1349 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1271 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 850 / 0 RNA helicase family protein (.1) AT1G58060 504 / 3e-156 RNA helicase family protein (.1) AT1G58050 462 / 3e-141 RNA helicase family protein (.1) AT1G06670 276 / 8e-76 NIH nuclear DEIH-boxhelicase (.1) AT2G30800 273 / 3e-75 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT2G47250 184 / 4e-48 RNA helicase family protein (.1) AT3G26560 186 / 1e-47 ATP-dependent RNA helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246000 [exp] 2105 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1350 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 1324 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 857 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 527 / 7e-165 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 292 / 6e-82 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G172500 [exp] 267 / 2e-73 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.012G034200 [exp] 195 / 2e-50 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.014G117900 [exp] 190 / 6e-50 AT3G62310 1252 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034126 [exp] 1911 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1909 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1307 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 1290 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1287 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 1199 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 782 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 559 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 297 / 4e-84 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 290 / 2e-81 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.008G014100.1 pacid=42807648 polypeptide=Potri.008G014100.1.p locus=Potri.008G014100 ID=Potri.008G014100.1.v4.1 annot-version=v4.1 ATGCAAAATTCGAAGCTTGTGCTAAGAAGTTTCCTTCTGGGATGCAGCACCACCGCCAAGAAGAAGTCGTTTTCCTATACCATCTTCAGCAATAAAAACA ACCACCCTTTATTTAGTTTGCTTTTGTTTCTACATAATTCTAATGAAACCAGCTTTTTAGTGACCAAAAGGCGTGGTTTTTGTGGGTATGCAGTAGAGCA GTTCTCTGATGACGAGTACGAGTGTGATTTTGAAAACCACAAGGCTTCGTCGTCTGTGGCCAATGTTGATGAGTGGAAATGGAAGCTCAGCTTGCTATTG CGCAGTGAAACAGACCAAGAGATTGTTTCTAGAGATAGAAAAGACAGGAGAGACTATGAGCAGATTTCAAATCTTGCTGGAAGGATGGGACTTTATAGTG AACTATATGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTACCTAACTACAGGCCTGATTTGGATGATAAGCGGCCACAAAGGGAGGTGGTTATCCCACT AAGTTTGCAAAGGAGGGTTGAGGGTTTACTTCAGGAGCATCTTGATAGAACTCAACTAAGTGCTGGAAAAGTTGGTGGTAATGCAGATGACGCGTCCATC AATCAGATTGAAGATACGAGTCCAGATGAGAATCCAGATTCATTTCTAGACCGCTCTGTGATGGAAAGGGTTCTTCAGAGGAGGAGTTTGCGAATGCGTA ACATGCAAAGAGCTTGGCGGGAATCACTTGAGGGCAGAAAAATGATGGACTTTAGGAAATCTCTACCTTCTTTCCAGGAAAAGGAGAAGTTACTCCAAGC AATAGCAAGGAATCAGGTCATTGTAATATCTGGAGAGACTGGATGTGGGAAAACCACTCAACTTCCTCAATATATTCTGGAGTCAGAAATAGAATCTGGG CGTGGAGCATTCTGTAGCATAATTTGCACTCAGCCTCGAAGAATATCTGCTATGGCTGTTGCAGATAGAGTGTCTGCGGAGAGAGGAGAGCCTCTTGGTG AAGCAGTTGGTTATAAAGTCCGACTAGAGGGTGTGAAAGGAAGAAACACACATCTGCTTTTTTGTACCAGTGGAATTTTACTTCGACGCCTGTTAAGTGA CCGCAACTTGAATGGCATAACCCATGTTTTCGTCGATGAAATTCATGAGCGAGGCATGAATGAAGACTTCCTATTGATTGTGCTCAAGGATCTTCTTTCA CGTCGTCGGGACTTGAGATTGATTTTAATGAGTGCCACTTTGAATGCGGAACTCTTTTCCAATTATTTTGGAGGAGCACCAACTATTCATATTCCAGGCT TTACATATCCAGTGAGGGCACATTTTTTAGAAGATGTACTGGAAATGACCGGATATAAGTTGACTTCTTTCAATCAAATTGATGATTATGGCCAAGAGAA AATGTGGAAAACACAGAGGCAACTGGCACCACGAAAAAGGAAAAACCAGATCACTACTCTCGTTGAGGATGCTCTTACTAATTCAAGTTTTGACAATTAT AGTTCCAGAGCACGTGACTCTCTGGCACGCTGGATGCCTGATTGCATAGGATTTAACCTTATTGAAGCAGTTTTGTGCCATATATGTCGGAAGGAACGAC CAGGTGCTGTCTTAGTTTTCATGACTGGCTGGGAGGATATTAGCTGTTTGAGGGATCAACTTAAAGCACATCCTCTCCTGGGTGATCCTAACAGAATTCT GCTTCTAACTTGCCATGGTTCTATGGCAACCTCAGAACAGAAACTGATTTTTGAGAAACCTCCTCCTAATGTACATAAAATAGTTCTTGCAACCAATATG GCAGAGGCAAGCATTACAATCAATGATGTAGTTTTTGTCATTGATTGTGGGAAGGCAAAAGAAACCACTTATGATGCTTTAAACAACACACCTTGTCTGC TACCTTCTTGGATATCAAAAGCATCTGCTCGACAAAGAAGGGGTAGGGCTGGCCGAGTGCAGCCAGGCGAATGTTACCACCTATACCCAAGATGTGTATA TGAAGCCTTTGCTGAATATCAACTTCCTGAACTTTTGAGGACTCCCCTGAACTCTCTTTGCTTGCAAATAAAGAGTTTGCAGGTTGGAAGCATAGGAGAA TTCTTGTCAGCTGCTCTCCAGCCACCAAAACCATTGGCTGTCCAAAATGCGATTGATTTTCTGAAGATGATTGGTGCATTAGATGAGAAGGAGAATCTGA CAAATCTTGGGAAGTATTTGACAATGCTTCCAGTAGATCCCAAGCTGGGTAAAATGTTAATAATGGGTGCCATCTTTGGGTGCTTTGGTCCTATATTAAC AATAGTGTCCGGGCTCAGTGTCAGGGATCCTTTCCTTCTGCCACAGGACAAAAAGGATTTAGCTGGGGCAGCAAAGTCTAGATTTTCTGCAAAAGACTAC AGTGATCATATGGCTCTTGTCCGTGCATATGAAGGATGGAAAGAAGCTGAAAGAGAAGGATCGGCATATGAGTATTGCTGGAGAAATTTCCTGTCTGCAC AAACTTTGCAGGCCATTCATTCTCTAAGGAAGCAATTTAACTTCATTTTAAAAGATGCTGGCTTAATAGAAGAAGATACAAACAACCACAACAAATTAAG TCACAACCAATCATTGGTTCGTGCAATTATATGCTCTGGCCTCTATCCTGGAATCGCGTCAGTAGTGCACAGAGAAACATCCATGTCTTTCAAAACAATG GATGATGGCCAAGTTTCTCTATATGCTAATTCTGTGAATGCACGCTATGAGACAATTCCCTATCCATGGCTGGTCTTTGGTGAAAAAGTAAAGGTCAACT CAGTTTTCATACGTGATTCCACTGGTGTATCTGATTCCGTACTGATCCTTTTTGGTGGTGCACTTGCTTGTGGAGCACAGGCTGGGCATCTGAAAATGTT GAATGGATACATTGATTTCTTCATGGATCATAATTTGGCAGAGTGCTTTTTAAAGCTTAATGAAGAACTTGATAAGCTTATTCAGAAGAAGCTTCAAGAT CCTAAACTTGACATTCTCAAGGAAGGAAAATACCTCATGCTTGCTGTTGAGGACCTGGTATCAGGAGATCAATGTGAAGGAAAATTTGTGTTTGGTCGTG AAAGCAGGAAGCCTAAGGTAACTAATGATAATGACAGATTTACAAAAGACGGAGCAAATCCAAAAAGTTTGCTACAAACCCTACTGATGAGAGCTGGACA CTCCCCTCCAAAATACAAGACAAAGCACCTTAAGACGAATGAGTTTAGGGCACTGGTTGAATTCAAGGGAATGCAGTTTGTGGGGAAGCCCAAGAGAAAC AAGCAACAAGCAGAGAGGGATGCTGCTATTGAAGCACTGGCCTGGTTAACCCATACATCCGACAATAATCAAAATGAGCATGACGACTCCCAACCTGATG TCACTGATAACATGCTCAAACTTCTTGGGAAACGTCGTAGATCAAAGCAGCGTCGCCCTGGTTGA
AA sequence Show only first row Show all	>Potri.008G014100.1 pacid=42807648 polypeptide=Potri.008G014100.1.p locus=Potri.008G014100 ID=Potri.008G014100.1.v4.1 annot-version=v4.1 MQNSKLVLRSFLLGCSTTAKKKSFSYTIFSNKNNHPLFSLLLFLHNSNETSFLVTKRRGFCGYAVEQFSDDEYECDFENHKASSSVANVDEWKWKLSLLL RSETDQEIVSRDRKDRRDYEQISNLAGRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRTQLSAGKVGGNADDASI NQIEDTSPDENPDSFLDRSVMERVLQRRSLRMRNMQRAWRESLEGRKMMDFRKSLPSFQEKEKLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG RGAFCSIICTQPRRISAMAVADRVSAERGEPLGEAVGYKVRLEGVKGRNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLS RRRDLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKRKNQITTLVEDALTNSSFDNY SSRARDSLARWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNVHKIVLATNM AEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGE FLSAALQPPKPLAVQNAIDFLKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFGCFGPILTIVSGLSVRDPFLLPQDKKDLAGAAKSRFSAKDY SDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFNFILKDAGLIEEDTNNHNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTM DDGQVSLYANSVNARYETIPYPWLVFGEKVKVNSVFIRDSTGVSDSVLILFGGALACGAQAGHLKMLNGYIDFFMDHNLAECFLKLNEELDKLIQKKLQD PKLDILKEGKYLMLAVEDLVSGDQCEGKFVFGRESRKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRN KQQAERDAAIEALAWLTHTSDNNQNEHDDSQPDVTDNMLKLLGKRRRSKQRRPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	0	1
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	1.41	0.9230
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	1.41	0.9047
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	1.73	0.9022
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	2.00	0.8987
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	4.12	0.8709
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	7.21	0.8751
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	8.36	0.8745
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.017G073900 [exp]	9.00	0.8598
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	9.16	0.8757
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	13.03	0.8781

Compare expression of checked genes

Potri.008G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.