Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04900 511 / 0 NOL NYC1-like (.1) AT4G13250 199 / 3e-59 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G03980 78 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 76 / 9e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 76 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 74 / 9e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 74 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 70 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G67730 68 / 1e-12 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT5G18210 66 / 4e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081200 [exp] 215 / 3e-65 AT4G13250 696 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G228533 [exp] 79 / 1e-16 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 77 / 6e-16 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 75 / 5e-15 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 74 / 1e-14 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 73 / 3e-14 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 71 / 7e-14 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 72 / 9e-14 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 70 / 2e-13 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033408 [exp] 508 / 0 AT5G04900 478 / 1e-170 NYC1-like (.1) Lus10034874 [exp] 490 / 3e-176 AT5G04900 466 / 7e-167 NYC1-like (.1) Lus10023644 [exp] 213 / 1e-64 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034917 [exp] 208 / 1e-64 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10026260 [exp] 79 / 1e-16 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 80 / 3e-16 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016996 [exp] 77 / 7e-16 AT3G51680 211 / 3e-67 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 77 / 1e-15 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 76 / 3e-15 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 76 / 3e-15 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.008G014200.5 pacid=42806384 polypeptide=Potri.008G014200.5.p locus=Potri.008G014200 ID=Potri.008G014200.5.v4.1 annot-version=v4.1 ATGGCTATTCCTTGTGCTTCCCTTCCCTTCCCTTCTTCTTCTCTTCTTCTCAAGGCCTCTTCTTTTTCCTCTCAGTTCCCTCCACTTCTTTCTCCTTCAC ACCTTTTCTTGACCGTTTGTTCCCGCCATACCCCAGCAAAAAGCACTAATGCAAGAAACAGCTATTACACCAACAATACGGGCATTGCATATTTGAAGTA TCCAGTAGTTGTGAAGGCACAAACTTCCTCTTCTTCTGCACTGAGTAGAGAGCCCATGTTGCCTCCTTTCAATATCTTAATCACTGGTTCAACAAAAGGA ATAGGGTATGCTTTGGCTAAGGAGTTTCTAAAGGCAGGTGACAATGTGATAATTTGCTCAAGGTCAGCTGAACGGGTGGAGTCTGCTGTTCAGAGCTTGA GAGAAGAATTTGGAGAGCAACGTGTGTGGGGTACAAAGTGTGATGTTAGAGAAGGAAAGGATGTGAAGGATTTGGTTGCATTTGCACAAGAAAGTCTCAA ATACATCGACATATGGATTAATAATGCAGGATCCAATGCTTATAGCTATAAGCCCCTGGCAGAAGCTTCAGATGAAGATCTTATAGAAGTTGTCACTACA AACACCCTTGGTTTGATGATTTGTTGTCGAGAGGCAATAAAAATGATGTTGAACCAACCTCGAGGGGGTCACATATTCAACATTGATGGAGCTGGCTCAG ATGGAAGACCAACCCCAAGATTTGCAGCATATGGGGCAACTAAGCGCAGTGTAGTGCATTTAACAAAATCCCTACAGGCTGAGTTGCGGATGCAAGATGT TCAAAATGTTGTAGCGCATAACCTGTCGCCTGGAATGGTCACAACTGATCTTCTCATGTCTGGAGCTACCACAAAGCAGGCCAAGTTTTTCATTAATGTT TTGGCAGAACCAGCTGAAGTGGTTGCAGAATACCTTGTTCCAAACATCAGATCTATCCCTGCCAATGGATCAACAAAGCCTACCTACATCCGTTTCCTCA CCGGGGTGAAAGCATACTCGCAGATATTCTCACAGAGATTTGCTTTCGGCGCACGAAGAAACAGATACTTGCTTGAAGATTGA
AA sequence Show only first row Show all	>Potri.008G014200.5 pacid=42806384 polypeptide=Potri.008G014200.5.p locus=Potri.008G014200 ID=Potri.008G014200.5.v4.1 annot-version=v4.1 MAIPCASLPFPSSSLLLKASSFSSQFPPLLSPSHLFLTVCSRHTPAKSTNARNSYYTNNTGIAYLKYPVVVKAQTSSSSALSREPMLPPFNILITGSTKG IGYALAKEFLKAGDNVIICSRSAERVESAVQSLREEFGEQRVWGTKCDVREGKDVKDLVAFAQESLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTT NTLGLMICCREAIKMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVQNVVAHNLSPGMVTTDLLMSGATTKQAKFFINV LAEPAEVVAEYLVPNIRSIPANGSTKPTYIRFLTGVKAYSQIFSQRFAFGARRNRYLLED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	0	1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	1.73	0.9750
AT3G05625			Tetratricopeptide repeat (TPR)...		Potri.013G012400 [exp]	2.00	0.9725
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	5.65	0.9661
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.002G069000 [exp]	6.70	0.9635
AT2G45270		GCP1	glycoprotease 1 (.1)		Potri.014G067800 [exp]	8.94	0.9593
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	9.48	0.9625	CPFTSY.1
AT3G09050			unknown protein		Potri.006G096700 [exp]	11.09	0.9663
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	11.22	0.9653
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	11.48	0.9605
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	14.49	0.9654

Compare expression of checked genes

Potri.008G014200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.