Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 692 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 370 / 5e-117 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 369 / 1e-116 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 356 / 8e-112 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 273 / 3e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 197 / 1e-52 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 191 / 2e-50 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 183 / 1e-47 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G61480 171 / 7e-44 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G36180 170 / 2e-43 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 765 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 702 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G333300 [exp] 435 / 9e-142 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G147700 [exp] 431 / 1e-140 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 373 / 5e-118 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 372 / 1e-117 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 190 / 4e-50 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 184 / 3e-48 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.017G016600 [exp] 180 / 7e-47 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033407 [exp] 763 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 758 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 622 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 602 / 0 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 432 / 1e-140 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 427 / 2e-138 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 425 / 8e-138 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 392 / 2e-125 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 346 / 4e-108 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 340 / 4e-106 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G014300.1 pacid=42808539 polypeptide=Potri.008G014300.1.p locus=Potri.008G014300 ID=Potri.008G014300.1.v4.1 annot-version=v4.1 ATGGCCAAACCAGTTCACTATCCATGCTATCTTCATCTCTTGTTTCTTATCCTTTCTTTTCATCGGTCAAGCCAGCTGCAGCCCTTTCAGTCTCAGTCCC TTCTGAGAATCCAGCAGCTTCTTAACTACCCATCTTTCTCGACCAGCTTTGACAACACCACAGATTTCTGCAACATTGAACCAACTCCATCTCTAACTCT ACTGTGCTATGAAGATAATATAACACAGCTTCACATTGTAGGAAATACTGGGGTTCCTCCAAATTTCTCCACAGACTATTTCTTTGCCACTGTTGCTAGT CTATCTAGCTTGAAGGTTCTGTCTTTGGTTTCTCTTGGCTTCTCGGGGCCACTGCCTGAAAGTATTGGTCAGTTATCTTCACTTGAGATATTAAATGCAA GTTCAAACTACTTCAGTGGCTCCATTCCAGCATCTCTTTCATCTTTGAAGAGCCTTCAGACACTGATTCTGGACCATAACAAGTTCAGTGGTGAAGTTCC TGGTTGGGTAGGTTTCCTTCCAGTTTTGGCTGTGTTGAGCTTGAAGAACAACTCCCTTAGTGGGTATCTACCAAATTCTCTGACGAGATTGGAAAGTCTA AGAATTTTCTCTCTCTCAAAGAATCACTTATCTGGACAAGTGCCTGATCTTCATAACTTGACCAACCTTCAAGTTCTTGAGTTGGAAGACAATCACTTTG GACCTGATTTTCCAGGTTTGCACAACAAGGTGGTGACTCTTGTGCTAAGAAATAATAGCTTTCATTCTGGCATACCTGCTGACTTAGTCACCTACCATCA GCTTCAGAAGTTGGACCTCTCCTTTAATGGATTTGTAGGACCATTTTTGCCATCTTTGTTGTCAAGCCCTCCAATGAATTATCTTGATATTTCACATAAC AAATTTACAGGGATGCTCTTCGAAAATATGTCCTGCCATGCTGAACTAGCCTATGTAGATTTATCCTCAAATCTTTTGACTGGAGAGTTACCTACTTGCC TAAACTTGAGTTCAGAGAGCAGAACTGTCCTGTATGCTAGAAACTGCTTGTCAAACAAAGAACAAGAACAGCATCCTTTTAACTTCTGTCACAATGAAGC ACTGGCTGTGAAAATCTTGCCTCGTGATGATGTTAAGCATCAGAGACACGATAAGGAAGTTCTTGCATCAAGTACTATGGGAGGAGTAGTTGGAGGAATT GCAATTGTTGGCTTGGTTTTCTTGTTTGTCAAGAGGGTATATAGTAAGGATGATGTGAAAAAACCCCAAACAAGGATACTCGTGAAGAATTTGTCATCAG TGAACACAGTGAAACTTCTTTCAGATGCAAGGCACATATCACAAACAATGAAGCTTGGAGCTAGCCTTCCTAATTATCGAACCTTTTCTCTGGAGGAGCT CAAGGAGGCAACAAATAACTTTGATGCCTCGAACTTACTTAGTGAAGATTCAAGCAGTCAGATGTATAAAGGAAAGCTCAATGATGGAAGTCTTGTTGCT ATTAGAAGCTCAAAAGTCAGGAAAAAGATCAGCCAACGTACCTTTACCCACCATATTGAGTTGATTTCAAAACTCAGACATAACCACTTGATCAGTGCTC TGGGACACTGCTTTGATTGCTGCCAGGATGATTCCAGCACCAGCAGAATATTTAATATATTTGAGTTTGTTCCAAATGGGACTCTTAGAGACTACATCTC TGGAATTCCAGAGAACAAGCTGAAATGGCCACAAAGAATAGGAGTTGCTATTGGAGTTGCAAGGGGTATTCAATTCCTGCACACGGGGATTGTCCCGGGT GTATTTCCAAACAATCTGAAGATAACAGATGTCCTATTGGACCATGATCTGCTTGTGAAACTCTGTAGCTATAACCTGCCACTACTCACTGAGGGATCGG TGGGCGCTGCAGTTTCTTCTGGAACAAAACAAAAATTTGGGACAAGGGATAGACATGAGGATAAGGAGGACATCTATGACTTGGGAGTAATCTTAGTTGA AATCATTTTTGGAAGGCCAGTGGTTAAAAATGAAGTCATCGTCTCAAAAGATCTGTTAAAAGTAAGCATGACAGTTGACGATGTAGCTCGAAGGAATATT GTTGATCCAGCAATTAACAAGGAGTGCTCAGATGAATCTCTAAAGATAATGATGGAGATATGTATTAGATGTCTTTCCAAAGAGCCATCTGATAGACCAT CAGTTGATGATGTGCTTTGGAACTTGCAGTTTGCAGCACAAGTTCGGGAGAGTTCCAGAACAAGTTAG
AA sequence Show only first row Show all	>Potri.008G014300.1 pacid=42808539 polypeptide=Potri.008G014300.1.p locus=Potri.008G014300 ID=Potri.008G014300.1.v4.1 annot-version=v4.1 MAKPVHYPCYLHLLFLILSFHRSSQLQPFQSQSLLRIQQLLNYPSFSTSFDNTTDFCNIEPTPSLTLLCYEDNITQLHIVGNTGVPPNFSTDYFFATVAS LSSLKVLSLVSLGFSGPLPESIGQLSSLEILNASSNYFSGSIPASLSSLKSLQTLILDHNKFSGEVPGWVGFLPVLAVLSLKNNSLSGYLPNSLTRLESL RIFSLSKNHLSGQVPDLHNLTNLQVLELEDNHFGPDFPGLHNKVVTLVLRNNSFHSGIPADLVTYHQLQKLDLSFNGFVGPFLPSLLSSPPMNYLDISHN KFTGMLFENMSCHAELAYVDLSSNLLTGELPTCLNLSSESRTVLYARNCLSNKEQEQHPFNFCHNEALAVKILPRDDVKHQRHDKEVLASSTMGGVVGGI AIVGLVFLFVKRVYSKDDVKKPQTRILVKNLSSVNTVKLLSDARHISQTMKLGASLPNYRTFSLEELKEATNNFDASNLLSEDSSSQMYKGKLNDGSLVA IRSSKVRKKISQRTFTHHIELISKLRHNHLISALGHCFDCCQDDSSTSRIFNIFEFVPNGTLRDYISGIPENKLKWPQRIGVAIGVARGIQFLHTGIVPG VFPNNLKITDVLLDHDLLVKLCSYNLPLLTEGSVGAAVSSGTKQKFGTRDRHEDKEDIYDLGVILVEIIFGRPVVKNEVIVSKDLLKVSMTVDDVARRNI VDPAINKECSDESLKIMMEICIRCLSKEPSDRPSVDDVLWNLQFAAQVRESSRTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	1.41	0.8034
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	2.00	0.7994
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	2.82	0.6918
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Potri.008G052601 [exp]	3.87	0.7282
AT1G48100			Pectin lyase-like superfamily ...		Potri.008G100500 [exp]	4.00	0.7330
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	4.24	0.7769
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	5.29	0.7057
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	6.00	0.7113
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	13.41	0.6723
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	21.93	0.5843

Compare expression of checked genes

Potri.008G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.