Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1610 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G27870 652 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 649 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G54280 645 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 645 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 635 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 634 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G13900 630 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 627 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 617 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1800 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1778 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1285 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 837 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.003G043300 [exp] 642 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G191400 [exp] 638 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.001G197500 [exp] 630 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 629 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.012G058000 [exp] 628 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033406 [exp] 1689 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1688 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1667 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1664 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1648 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1636 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10022238 [exp] 644 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 630 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10008473 [exp] 630 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 629 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G014400.9 pacid=42808563 polypeptide=Potri.008G014400.9.p locus=Potri.008G014400 ID=Potri.008G014400.9.v4.1 annot-version=v4.1 ATGGATTCTCAAAACCCATTTGAGGAGGAGATCTCATTGAATCAAAGGAAGGGAGGGAATTCAGTTAGGGAAGTGAGGCATGGATCAAGAGGGGGTGATA TAGAGTTGTTGGGTTTGTCGCAGAAAGAGATTGGTGATGATGATGCTAGATTGGTTTACTTGAACGATCCTGTAAAGAGTAATGAGAGATACGAGTTTGC TGGTAATTCGATTCGAACTAGTAAATATTCAGTGTTTTCATTTCTTCCAAGGAATTTGTTTCGACAGTTTCATAGAGTAGCGTACATTTATTTTCTCATC ATCGCTGTGCTTAATCAGCTTCCCCAGCTGGCAGTCTTCGGCCGGGGAGCTTCCATCATGCCACTTGCATTCGTGCTGTCAGTTACGGCAGTCAAGGATG CATACGAGGATTGGAGGAGGCATAGGTCAGATAGAGTTGAGAATAATAGATTAGCTTGGGTTTTAGTTGATGATGAATTTCGACAAAAGAAATGGAAGGA TATTCAGGTTGGTGAGATACTCAAGATTCAGGCTAATGAAACCTTTCCTTGTGATATTGTACTTCTCTCAACTAGTGAGCCAACTGGGGTTGCTTTTGTG CAGACTGTAAATTTGGATGGAGAATCGAATTTGAAGACTCGGTATGCAAAGCAAGAGACCATTTCAAAGATTCCTGGAGAGGAAATGATTAATGGGTTGA TTAAGTGCGAGAGGCCTAATAGAAACATATATGGATTTCAGGCAAACATGGAAGTTGACGGGAAAAGACTGTCACTTGGGCCCTCAAACATTCTTCTTCG TGGTTGTGAGCTCAAGAATACTGCTTGGGCAATTGGAGTTGCTGTTTATTGTGGCCGTGAAACCAAGGCCATGCTTAACAGCTCAGGAGCTCCATCAAAA AGGAGCCAGCTTGAGACACATATGAACTTTGAGACCATCATACTCTCTCTGTTCCTTATTTTTTTGTGTAGTGTTGTTTCTATATGCGCTGCTGTGTGGT TAAGGCGCCGTAAGGATGAGTTAGATATCTTGCCTTTTTATAGGAGAAAGGACTTTGCACACGGGGCTCCACAGAATTTTAATTATTATGGATGGGGGTT GGAGATATTTTTTACATTCCTCATGTCAGTTATTGTATTCCAAATCATGATCCCTATTTCTTTGTACATTTCCATGGAGCTTGTCCGGGTTGGTCAGGCT TATTTTATGATTCGAGATATGCTACTGTATGACGAGGGGTCAAATTCAAGATTTCAGTGCCGGTCTTTAAATATTAATGAGGATTTAGGGCAAATAAAGT ATGTTTTCTCTGACAAAACTGGCACTCTTACTGAGAACAAGATGGAATTTCAACGTGCAAGCATATGGGGAGTAGATTACAGTGATGGGAGAACCGTTTC ACGAAATGATCCTGCTCAAGCAGTGGATGGGAAGATTTTGCAGCCAAAGATGGAGGTGAAGGTTGACCCTCAGCTTCTAGAGTTATCAAGAAGTGGAAAG GATACGAAGGGAGCCAAACATGTTCATGATTTCCTCCTTGCATTGGCAGCATGTAACACAATCGTGCCTCTTGTTGTCGATGACACATCTGATTCTACAG TAAAGTTGTTGGATTACCAAGGGGAGTCTCCGGATGAGCAAGCACTCGCTTATGCTGCTGCTGCATATGGTTTTATGCTTACAGAACGAACTTCTGGTCA TATAGTTATTAATATTCAAGGAGAAAGACAGAGGTTCAATGTTTTGGGTTTGCATGAGTTTGATAGTGACCGGAAGAGGATGTCGGTTATATTGGGATGC CCTGACAAGACTGTGAAAGTCTTTGTGAAAGGTGCTGACACATCCATGTTTAGTGTGATAGATAGATCTCTGAACACGAACATTATACATGCAACTGAAG CCCATCTTCAGACTTACTCCTCAATGGGATTGAGAACACTTGTTTTTGGGATCCGTGAATTGAATAATTCAGAGTTTGAGCAGTGGCACTTAACCTTTGA GGCAGCTAGCACAGCTATAATTGGCAGGGCAGCTTTGCTACGCAAGGTTGCTAACAATGTCGAAAACAGTCTTACCATACTCGGTGCTTCTGCTATTGAA GATAAACTGCAACAAGGGGTGCCAGAAGCCATAGAATCTTTGAGGACAGCAGGGATCAAAGCATGGGTTTTAACTGGGGACAAGCAAGAAACTGCTATAT CAATTGGCTACTCCTCAAAGCTCCTGACAAGCAAAATGACCTCAATTATAATCAATAGCAACTCTAAGCAGTCTTCAAGGAAGAGTTTAGAAGATGCCTT GGTTGCATCTAAGAAGCTCACGATCACATCTGGGATAACACATAATACTGGGGCAAGTGATGCAGCTGCTGTGAATCCAGTGGCGTTGATTATTGATGGC ACCAGCCTTGTCCATATACTTGACAGTGAACTTGAAGAACTGCTCTTTGAATTAGCCAGTAAATGTTCTGTGGTTCTGTGTTGCCGAGTGGCTCCATTGC AAAAAGCTGGAATTGTTGCCCTTGTGAAGAACAGGACTCGTGACATGACACTTGCCATTGGAGACGGTGCAAATGATGTCTCAATGATCCAAATGGCCGA TGTTGGAGTTGGCATTAGTGGGCGAGAGGGTCAGCAAGCAGTAATGGCATCAGATTTTGCAATGGGGCAGTTCAGATTCTTAGTACCACTTTTATTGGTC CATGGACATTGGAATTACCAGCGGATGGGATATATGATACTATATAATTTTTACAGGAATGCAGTGTTTGTTCTTGTTTTGTTTTGGTATGTAATCTTTA CTTCTTTCACTTTGACGACTGCAATCACTGAGTGGAGCAGCATGTTGTATTCTATTATCTACACAGCATTGCCTACCATTGTAGTTGGTATTCTTGACAA GGACCTAAGTAGAAGGACTCTCCTAAAGTATCCCCAGCTTTATGGAGCAGGGCACAGACAAGAGGCCTACAACTCTAAGTTGTTTTGGCTGACAATGATC GACACCTTGTGGCAAAGTGTGGCTGTCTTTTCCATCCCTCTCTTTGCATACTGGGCCAGCAGCATTGACGGATCAAGTATAGGAGATCTGTGGACGCTTG CAGTGGTCATTTTGGTTAATTTGCACTTGGCCATGGACATCTTCCGGTGGAGTTGGATTACTCATGCAGTTTTATGGGGATCCATAATTGCAACTTTCAT TTGTGTCATTGTCATTGATGCTGTGCCTATTTTCACTGGTTACTGGGCCATCTTCCATGTTGCAAAGACAGAATTGTTTTGGTTGTGCTTGCTCGCTATA GTTTTAGCAGCTCTGATTCCTCGATACGTTGTAAAATTTCTGTATCAATACTATAGTCCTTGTGATATTCAGATAGCAAGAGAAGCTGAGAAGTTTGGGA GTCCAAGGGAGCCGCGGAATACAAAAATAGAAACAAATCCGATATTGGGATCTCCACATAGATGA
AA sequence Show only first row Show all	>Potri.008G014400.9 pacid=42808563 polypeptide=Potri.008G014400.9.p locus=Potri.008G014400 ID=Potri.008G014400.9.v4.1 annot-version=v4.1 MDSQNPFEEEISLNQRKGGNSVREVRHGSRGGDIELLGLSQKEIGDDDARLVYLNDPVKSNERYEFAGNSIRTSKYSVFSFLPRNLFRQFHRVAYIYFLI IAVLNQLPQLAVFGRGASIMPLAFVLSVTAVKDAYEDWRRHRSDRVENNRLAWVLVDDEFRQKKWKDIQVGEILKIQANETFPCDIVLLSTSEPTGVAFV QTVNLDGESNLKTRYAKQETISKIPGEEMINGLIKCERPNRNIYGFQANMEVDGKRLSLGPSNILLRGCELKNTAWAIGVAVYCGRETKAMLNSSGAPSK RSQLETHMNFETIILSLFLIFLCSVVSICAAVWLRRRKDELDILPFYRRKDFAHGAPQNFNYYGWGLEIFFTFLMSVIVFQIMIPISLYISMELVRVGQA YFMIRDMLLYDEGSNSRFQCRSLNINEDLGQIKYVFSDKTGTLTENKMEFQRASIWGVDYSDGRTVSRNDPAQAVDGKILQPKMEVKVDPQLLELSRSGK DTKGAKHVHDFLLALAACNTIVPLVVDDTSDSTVKLLDYQGESPDEQALAYAAAAYGFMLTERTSGHIVINIQGERQRFNVLGLHEFDSDRKRMSVILGC PDKTVKVFVKGADTSMFSVIDRSLNTNIIHATEAHLQTYSSMGLRTLVFGIRELNNSEFEQWHLTFEAASTAIIGRAALLRKVANNVENSLTILGASAIE DKLQQGVPEAIESLRTAGIKAWVLTGDKQETAISIGYSSKLLTSKMTSIIINSNSKQSSRKSLEDALVASKKLTITSGITHNTGASDAAAVNPVALIIDG TSLVHILDSELEELLFELASKCSVVLCCRVAPLQKAGIVALVKNRTRDMTLAIGDGANDVSMIQMADVGVGISGREGQQAVMASDFAMGQFRFLVPLLLV HGHWNYQRMGYMILYNFYRNAVFVLVLFWYVIFTSFTLTTAITEWSSMLYSIIYTALPTIVVGILDKDLSRRTLLKYPQLYGAGHRQEAYNSKLFWLTMI DTLWQSVAVFSIPLFAYWASSIDGSSIGDLWTLAVVILVNLHLAMDIFRWSWITHAVLWGSIIATFICVIVIDAVPIFTGYWAIFHVAKTELFWLCLLAI VLAALIPRYVVKFLYQYYSPCDIQIAREAEKFGSPREPRNTKIETNPILGSPHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	0	1
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	1.00	0.8530
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	4.89	0.7948
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.016G056200 [exp]	8.36	0.7545	Pt-VLN2.2
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Potri.013G077700 [exp]	9.48	0.8044
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	14.89	0.8254
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	15.74	0.8206
AT5G23340			RNI-like superfamily protein (...		Potri.006G238300 [exp]	18.57	0.7211
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	23.49	0.7347
AT4G31570			unknown protein		Potri.018G008600 [exp]	24.00	0.7887
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	25.69	0.7882

Compare expression of checked genes

Potri.008G014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.