Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1665 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G27870 701 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 687 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G13900 680 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 679 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 674 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 673 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G72700 664 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 662 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 658 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 2197 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1816 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1342 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 1292 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G039900 [exp] 668 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.003G043300 [exp] 666 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G191400 [exp] 665 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.001G197500 [exp] 657 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 657 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034872 [exp] 1778 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1775 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1763 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1758 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1734 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1711 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10013286 [exp] 680 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10022238 [exp] 673 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 671 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 664 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G014600.2 pacid=42807783 polypeptide=Potri.008G014600.2.p locus=Potri.008G014600 ID=Potri.008G014600.2.v4.1 annot-version=v4.1 ATGGCCACAGAGAGGGCTTTACTGATCCCATCACCAAGAACCCCAAATATTACTCAGGATTTGCCTAGTTTACCTGTTTCATCTAATAGCGAAGTAAAAG TCAACCTTGATAATCCCAGATTGGTTTCTGGGATGGACTCTCAAAACCCAACTGAAAGTTCATCAAGTTATGAGATTTCTCTTAAATCTGCATCAAGAAG AAGTCTTTCTTCAAATCCATCAAGGGCTTCACGTGGGAATTCAATTGGAGCAGGGAGTTTTCGTGATCTAGGATCAAAACCTGTGATGCTGGGGTCTAGA CGAGGTGATTCCGAGGTGTTTAGTGCATCCCAGAAAGAAATTAGCGATGAAGATGCTAGGCTGGTTTACTTAAATGACCCTGCAAAGTCAAATGAGAGGT TTGAGTTTACTGGGAACTCAGTTCACACTGCGAAATATTCTCTCATTTCGTTCATACCTCGAAATTTGTTCGAGCAGTTTCATAGAGTTGCATATGTATA CTTCCTTATTATTGCTGTGCTCAATCAGCTCCCCCAGCTCGCAGTTTTCGGCAGGACAGCTTCCATTTTGCCACTCGCCTTTGTGCTGCTAGTTACAGCA GTTAAAGATGCTTTTGAAGATTGGAGAAGGCATATGTCAGATAGAATTGAAAACAGTAGATTGGCTTGGGTTTTGGTCAATGATCAGTTTCAAGAAAAGA AATGGAAGGACATTCAGGTTGGTGAGATAATCAAGATTCAGGCAAATGACACTCTTCCTTGTGATATGGTGCTGCTCTCCACTAGTGATTCAACTGGGGT GGCCTATGTGCAGACTATAAATTTGGACGGAGAGTCGAATTTGAAGACCAGGTATGCAAAGCAAGAGACCCTTTCAAAGATTCCTGAAAAGGAAAAGATT AGTGGGCTGATCAAGTGTGAGAAACCCAATAGAAACATCTATGGATTTCAGGCAAACATGGACATTGATGGGAAACGACTGTCACTTGGGCCCTCCAATA TTATTCTTCGTGGCTGTGAGCTCAAAAATACCTCCTGGGCAATTGGAGTTGCAGTGTATTGTGGCCGTGAGACCAAGGCAATGCTTAACAACTCGGGAGC CTCATCAAAAAGGAGCTGGCTTGAGACACGTATGAATTCAGAGATCATTGTACTCTCTGTGTTTCTTATTGCTTTGTGTACCGTCGTCTCCATCTCTGCT GCTGTGTGGTTAGGGCGCCACCGTGACGAGTTAGACACTATACCCTTTTATAGAAGAAAACGTTTCAACGAGGCAGACCCAAAGAACTATAATTATTATG GATGGGCGGCAGAGATAGTTTTTACGTTCCTCATGTCAATTATCGTGTTCCAGATCATGATCCCTATTTCTTTGTACATTTCTATGGAGCTTGTCCGGGT TGGCCAGGCTTACTTCATGATTCGAGATACGCAAATGTACGACGAGGCTTCAAATTCAAGATTTCAATGCCGGGCGTTGAATATAAATGAGGATTTAGGT CAGATAAAGTATGTTTTCTCTGATAAAACTGGTACACTCACTGAGAACAAGATGGAATTTCAATGTGCAAGCGTATGGGGAGTAGATTACAGTGATGGGA AGGCCAACACACAAAATCAGCAAGCTAGATATTCTGTCAAAGTGGATGGGAAGGTTGTGAGGCCGAAGATGACCGTGAAGGTTGATCCCCAGCTTTTAGA ATTATCAAGAAGTGAAAGGGATACAGAAGAAATCAAACATGTACATGATTTCTTCCTTGCATTGGCAGCTTGCAACACAATTGTGCCTCTTATTGTCGAG GACAAGTCTGATCCTACCATGAAGTTGATGGATTACCAAGGGGAGTCTCCAGATGAACAGGCACTGGCTTATGCTGCTGCAGCGTATGGCTTTATGCTTG TAGAACGGACTTCTGGCCATATAGTTATTGATATTCACGGAGAAAGACAAAGGTTCAATGTTTTTGGCTTGCATGAGTTTGATAGTGACCGGAAGAGGAT GTCAGTTATACTGGGGTGCCCTGACAGTACTGTGAGAGTCTTTGTAAAAGGTGCCGATTCATCCATGCTTAGTGTGATAGATAGATCCCTGAACAAGAAT GTAATACAGACAACCAAAGGTCATCTCCACGCTTACTCCTCACTGGGTTTGAGAACACTCGTTATCGGGATGCGTGACTTAAGTGAGTCAGAGTTTGAGG AGTGGCACTTCTCTTTTGAGGCAGCTAGCACAGCTGTAGTTGGCAGGGCTGCTTTGCTTCGTAAGGTTGCTGGCAATGTTGAAAAGAGTCTCACAATACT GGGTGCATCAGCCATTGAAGATAAACTGCAGAAAGGGGTGCCAGAAGCCATAGAATCTTTGAGGACAGCAGGGATTAAAGTATGGGTTTTGACCGGGGAC AAGCAAGAAACTGCCATTTCAATTGGCTACTCCTCAAAGCTCCTAACAAACAAAATGACCCAGATTATAATTAATAGCAACTCTAGGCAGTCATGTCGGA AATGTTTAGAAGATGCCTTGGTCATGTCTAAGAATCTCGGGACCGTGTCTGAAACATCAGATAACACCGGAACAAGTTCTGAAGCTGCTAGAAGCCTTGT GGCCTTGATTATCGATGGTACGAGCCTTGTCTATATACTTGACAGTGAACTTGAAGCGCAGCTCTTCCAATTGGCCAGTACATGTTCCGTGGTCCTTTGT TGCCGGGTGGCTCCATTGCAGAAAGCTGGCATTGTGGCGCTAGTGAAGAAGAGGACTACTGACATGACACTCTCCATTGGAGATGGAGCTAATGACGTCT CAATGATCCAAATGGCTGATGTGGGGGTTGGCATCAGTGGGCAAGAGGGTCGGCAAGCTGTAATGGCATCGGATTTTTCAATGGGGCAATTCAGATTCTT GGTTCCACTTTTATTAGTCCATGGACACTGGAACTACCAGCGTATGGGCTACATGATACTTTACAATTTTTACAGGAATGCCGTCTTTGTTTTCGTTTTA TTCTGGTATGCGCTCTTTGCTTGTTTCACTTTGACGACTGCAATCAACGAGTGGAGCAGCATGTTGTATTCTATAATTTACACTTCACTGCCCACCATTG TTGTTGCTATTTTTGACAAGGACCTAAGTAGAAGGAATCTCCTACAGTACCCTCAGCTTTATGGAGCTGGACAAAGACAAGAGGCGTATGACAGAAAATT GTTTTGGCTAACAATGTCGGACACTCTGTGGCAAAGTGTGGTTGTCTTTTTCGTCCCTCTCTTTGCATATTGGGCGAGCACCATCGATGTGCCAAGTATC GGAGACCTTTGGACACTCGCGGTGGTTATTTTGGTTAATCTGCACTTGGCCATGGACATCATCCGATGGAATTGGATCTTTCACGCAGTTATCTGGGGAT CTATAGTAGCAACTTTCATTTGTGTCATGATCCTCGATGCCTTTCCCATGTTTGCTGGTTACTGGGCAATCTTCAACATAATGGGGGAGGGATCTTTTTG GGTGTGCTTGTTTATTATAATCATAGCAGCACTCCTTCCTCGTTTTGTTGTCAAAGTACTGTATCAATACTTCACTCCTGATGACATTCAGATTGCAAGA GAAGCTGAGAAGTTCGGAAATCTAAGGGACATACCGGTAGAGGTAGAAATGAATCCCATCATGGAACCATCTTCTCCTCGGAGATGA
AA sequence Show only first row Show all	>Potri.008G014600.2 pacid=42807783 polypeptide=Potri.008G014600.2.p locus=Potri.008G014600 ID=Potri.008G014600.2.v4.1 annot-version=v4.1 MATERALLIPSPRTPNITQDLPSLPVSSNSEVKVNLDNPRLVSGMDSQNPTESSSSYEISLKSASRRSLSSNPSRASRGNSIGAGSFRDLGSKPVMLGSR RGDSEVFSASQKEISDEDARLVYLNDPAKSNERFEFTGNSVHTAKYSLISFIPRNLFEQFHRVAYVYFLIIAVLNQLPQLAVFGRTASILPLAFVLLVTA VKDAFEDWRRHMSDRIENSRLAWVLVNDQFQEKKWKDIQVGEIIKIQANDTLPCDMVLLSTSDSTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKI SGLIKCEKPNRNIYGFQANMDIDGKRLSLGPSNIILRGCELKNTSWAIGVAVYCGRETKAMLNNSGASSKRSWLETRMNSEIIVLSVFLIALCTVVSISA AVWLGRHRDELDTIPFYRRKRFNEADPKNYNYYGWAAEIVFTFLMSIIVFQIMIPISLYISMELVRVGQAYFMIRDTQMYDEASNSRFQCRALNINEDLG QIKYVFSDKTGTLTENKMEFQCASVWGVDYSDGKANTQNQQARYSVKVDGKVVRPKMTVKVDPQLLELSRSERDTEEIKHVHDFFLALAACNTIVPLIVE DKSDPTMKLMDYQGESPDEQALAYAAAAYGFMLVERTSGHIVIDIHGERQRFNVFGLHEFDSDRKRMSVILGCPDSTVRVFVKGADSSMLSVIDRSLNKN VIQTTKGHLHAYSSLGLRTLVIGMRDLSESEFEEWHFSFEAASTAVVGRAALLRKVAGNVEKSLTILGASAIEDKLQKGVPEAIESLRTAGIKVWVLTGD KQETAISIGYSSKLLTNKMTQIIINSNSRQSCRKCLEDALVMSKNLGTVSETSDNTGTSSEAARSLVALIIDGTSLVYILDSELEAQLFQLASTCSVVLC CRVAPLQKAGIVALVKKRTTDMTLSIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFSMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVFVL FWYALFACFTLTTAINEWSSMLYSIIYTSLPTIVVAIFDKDLSRRNLLQYPQLYGAGQRQEAYDRKLFWLTMSDTLWQSVVVFFVPLFAYWASTIDVPSI GDLWTLAVVILVNLHLAMDIIRWNWIFHAVIWGSIVATFICVMILDAFPMFAGYWAIFNIMGEGSFWVCLFIIIIAALLPRFVVKVLYQYFTPDDIQIAR EAEKFGNLRDIPVEVEMNPIMEPSSPRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.002G158000 [exp]	1.00	0.9275
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	2.00	0.9104
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	2.44	0.9235
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	2.44	0.9212
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	4.89	0.9061
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	5.47	0.9079
AT3G13600			calmodulin-binding family prot...		Potri.003G218800 [exp]	6.00	0.8667
AT2G40095			Alpha/beta hydrolase related p...		Potri.008G067700 [exp]	6.70	0.9002
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.008G040500 [exp]	6.70	0.8596
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	7.00	0.9039

Compare expression of checked genes

Potri.008G014600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.