Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 378 / 2e-110 AtNUP1 unknown protein AT5G20200 88 / 3e-17 nucleoporin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G244700 [exp] 1211 / 0 AT3G10650 353 / 8e-102 unknown protein Potri.008G015350 [exp] 193 / 2e-54 AT3G10650 77 / 2e-15 unknown protein Potri.018G129900 [exp] 113 / 4e-25 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.018G006200 [exp] 74 / 7e-13 AT4G31430 148 / 4e-38 unknown protein Potri.006G275200 [exp] 56 / 1e-07 AT4G31430 156 / 3e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028861 [exp] 494 / 1e-152 AT3G10650 436 / 2e-131 unknown protein Lus10034137 [exp] 473 / 4e-146 AT3G10650 323 / 2e-92 unknown protein Lus10043447 [exp] 461 / 1e-139 AT3G10650 320 / 4e-90 unknown protein Lus10008959 [exp] 436 / 2e-131 AT3G10650 405 / 4e-120 unknown protein Lus10043265 [exp] 91 / 4e-18 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10019408 [exp] 73 / 1e-12 AT5G20200 273 / 2e-80 nucleoporin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G014800.1 pacid=42808768 polypeptide=Potri.008G014800.1.p locus=Potri.008G014800 ID=Potri.008G014800.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGGCTGGTCGGGAAAGTAACGAGAGGCTGTATGAAGACCGAGGAGGCTACGGGAAGTTTCGAAAACGGCCGTTTCGAAGGAGTACGCAGA CGACGCCGTATGATCGTCCTTCGACGGCAATTCGAAACCCTGGCGGGATTAGTAATGGTTGGTTGTCGAAATTAGTGGATCCGGCTCAGAGACTCATTGC TTCTAGCGCACACAGGCTTTTCGCCTCTGTCTTTCGAAAACGGCTACCTGCGCCGCCGGTGGTAACTCCTCGGTCGCAGCCTCCGGAGACGGAGCGGGAG ACAGACGTGAACCCGGGAGCATTGGATAAGCCAAAGGGAATGTCTTCCACAGATTGTCTTGAAGTGCATAGAGAAGCCATCAATGCAAGCAGTGGTCTGA TTAATAGTTTCGATAGAGGTGGGGTCACTGAACTCGAATTAATTCTAAAGCAGAAGACCTTTACCAGGTCTGAGATTGATCGATTGACAGCTCTGCTGCA ATCCAGGACTGCTGATTTTCCAACTGGTAATGAAGAGAAAAAACCTGAAGTGATTTCTTCAAGAGCCATGGTCTCTGAAGGCAAAAAGGAGTTATTGACT GTTCCCGTTACTAATGGGTTTGAGAGCCGCATTAATTCAACACCTATTGTCTGCTCAAGTGTCGTCAATGAGGATGTTGCTTCACCTACAGAGCTTGCAA AAGCTTACATGGGTAGTAGGCCTTCAAAAGTATCACCATCAATGCTAGAATCACGCTGCCAGCCATTTCGGGATAATTCAACAGCTCTGATCAACCATAC ATTCACTCCAAAATCACCAATGATGTCACTCACGCCACGTTCTTCTGGCTGTCCTGGGGTTCCTGAGAATTATTTTGTGACACCAAGGTCTCGAGGCAGA TCTGCTATATACAATATGGCTCGAACACCATACTCCAGAGTTCATGCATCTACTCGCCTCCAGGGTGCCGGAACATCAAGTGATGCTTTCGCTGGACCTT CATTTTCATCTCAGAATGCATTGGAGAGCAGCAGATTTTCTGGATCTAAACAAGGGGCTTTAAAACGGAGGAGTTCTGTCCTGGATAATGATATAGGATC TGTTGGTCCCATACGTAGAATTCGTCAGAAATCAAACCTTCTGCCTACCTCTGGAACCCTTTCTATTCGCGGAGCTGGTATCGGCTCTAATGCTGCTCAA AAACTACCCTCAACAGAGAAGCCAGTTTTAGTGGGTGAACCATCAAAGGATAATGGGGATAACAATGTCTATGGTACTACTTTTACCCCTGTTCCCTCCA AGTCAAGTGAGATGGCATCAAAGATATTGCATCAGCTGGATGTGTTGGTCTCATCAAGGGAGAAGTCTCCTGCCAAGTTGTCACCATCCATGCTACGGGG ACCAGCTCTTAGAAGCCTGGAGAATGTAGATTCTTCAAAGTTTGTAGAAATTGATAATGATACTAACAAGTTAGCCTTGAAACATGATACCTTGTTACCT GATGCAAGAGAGTCTGTGTCACAAAAGCAAGACAAAATTGAAGAAAAGGGTCCTAGCAAACCCATTGCTCCATGTGGCAAGTCAGCCTTGGCAGGAAATG GTATGGATACCACAAGTTTATTGAAGAATGATTTGGCTGGGGTCAAAACATCAGCTTTTCCTGTGATGAGCACCTTTGCTCAGGCTCCTGTACAAAAGAA AAGGGCTTTCCAGATGAGCGCACAAGAGGATTTTCTGGAGCTTGATGATGATGACTACTCTAATGGGACTGCATCTGGTATGTTGGCTGAAGGGAGAGAA AAGGTGGATACCAAATTGGTAGAAAAGAAGACCATTGTTGCTGAGGCTGTTGTAGTGGAGAAGTCTCCGGTCCAATCTGAAGTCAACTCCCCATCAAGTT ATACATTGAACAAAAAAAATGCAGGGATTGATGGGTCTGTGGTTGTGGAAAAGAGCATTGGCTTTATTTCCCCAGCAGCACCTCTGCCTACCATTACTGA TAAGCAGGCTGCGGTAAACAAGTTAGAATCAATATCTGATGAAGTTGCCCTACCAAAGTATTCGAATGCTTTGCCCCAAATATTTAGCACCGCTGAGAAG GTTGCTTTGCCAAAGGAACCAAATGGCACCTCTCAATTTTTCCATTTTAGCAATAGAACTGGTGATAAAGCTGCACCACTCACACTTACCTCAGTCATGA GTGACCCATCTGGCCAAAAGTTGGGTGTATCATCTGATGCTGGACCAAAGGGTTTCAGCTTTACACCTATTGCTACTGGTGCTACTGAGTTGGTGACAAG AGATCCTGGATTAGATAAAGGTGATGATAAGGACAGTTTGAAGATCGGAAACTCATTCAGGACAGCTGAAAATGTGCCTTCTACATCAATTTCATCAAAT GGAAGCCTATTCTCATTTGGCATCACCTCCAATAGTTCAAGTCTAAATAATGGATTTCTTGCTTCTACTACCCCATCTTCATTTTCCTCTCCCAGTCTGC CTCTATTTTCCAGTAACTTAACTGGTCAAAAATCATCTAGCATCCCTTCCAACAGTGTTGCTAGCAGCAGTACTAATGCCACTACCACTGCTTTCACAGC TGCAAGCACTAATGGGAATAGCAACTTCTCTGTTTCAGCATCGGCATCAGAACCTACCTTGACAGCTGCATCTATTTTTAAATTTGGGACTGTCTCATCA AATTCAGTCTTAACAGTACCATCAATTACTACTGAAACAACAGAAGTCAAGACCAAAGAAACAAGTTTTAGTGCTTCTAGTGGCACATCCTCTGCAATGA CAAGCACAACTGGCAGCATTTTTGGTGGTACTTCTGCAATCACGAATGCAGGCAATAATATTTTTGGTGATACCACTGCAGTTACTGGCAAAGAAAATAG TGTTTTTGGTGGTACATCCCCTGCAGTTACAAGTACAGAAAGTAGTGTTTTGAATGCCACATCTGCAGTTATGAGCACAGGAAGTGGTCCTTTTAACTTC AATGCTGGGAGCACAACTTCAGCTGCTACTAATCAATCTCAGGGTTTTAATCCTTTTAATGCTGGCACTACTCAGGTTTCTGCTGCTGGAACTGGTTTGG CAACTTCAACACAGAGTATGCCGATGCAATTTAGTTCACCTGCATCAACTGCGAGTTCAGCCTTCTCTTCTGGCAGTTCCACATTTGGTTATGTGAATAC AGCCTTCTCTTCTGGCAGTTCCACATTTGGTTCCTCTACATCTAAATTGTTAAGTTCTGGTACTACGTTTGGACTTAACTCTTCCACTTCCGAGTCCAGC TCTGTTAGCTCCATGGCGAGCCCCGCATCTGCTGTATTTGGTTCCAACTGGCAGGCACCGAAATCTACTGGATTTAGTTCCACACCATCCTCTTCTTCCT CAACGTTGTTTGCCTTCGGAGCAACTTCTAATACTGGTACGAGCAGTGCACCCATGGTGTTTGGATCAACCTCTAGTGTCTCATCTGCTCCCCCTTTCCC CTTCAGTTCACCTGCATCTGCTACTCCATCACAGTCTGTGTTCGGTGCCCCAAATCCTAGCTTCGGATTTGGTTCTTCATCTGGTAATAATGACCAAATG AGCATGGAGGACAGCATGGCAGAGGACACAGTTCAGGCAACCGCGCCTTCAGTTTCTGTATTTAGCCAACAACCAACTGCACCTGGCTCAATTTTTGGTT TTTCAGCTCCATCGGGTGGGAATCAGTTTGGTTCTACAGGTCCACCAGGTGCAAATCCCTTTCAATTTGGAAGCCAACCAAATCTTGCTGCTCCGCAGAA CCCATCTTTTCAAGCTTCAGGTAGTCTAGAGTTTAATGCTGGAGGAAGCTTCTCATTGGGAACAGGTGGCGGTGACAAGTCCCATAGAAAATTTGTCAGA GTCAAAAAAACACAGCGCAAGCGGTAA
AA sequence Show only first row Show all	>Potri.008G014800.1 pacid=42808768 polypeptide=Potri.008G014800.1.p locus=Potri.008G014800 ID=Potri.008G014800.1.v4.1 annot-version=v4.1 MAAAAGRESNERLYEDRGGYGKFRKRPFRRSTQTTPYDRPSTAIRNPGGISNGWLSKLVDPAQRLIASSAHRLFASVFRKRLPAPPVVTPRSQPPETERE TDVNPGALDKPKGMSSTDCLEVHREAINASSGLINSFDRGGVTELELILKQKTFTRSEIDRLTALLQSRTADFPTGNEEKKPEVISSRAMVSEGKKELLT VPVTNGFESRINSTPIVCSSVVNEDVASPTELAKAYMGSRPSKVSPSMLESRCQPFRDNSTALINHTFTPKSPMMSLTPRSSGCPGVPENYFVTPRSRGR SAIYNMARTPYSRVHASTRLQGAGTSSDAFAGPSFSSQNALESSRFSGSKQGALKRRSSVLDNDIGSVGPIRRIRQKSNLLPTSGTLSIRGAGIGSNAAQ KLPSTEKPVLVGEPSKDNGDNNVYGTTFTPVPSKSSEMASKILHQLDVLVSSREKSPAKLSPSMLRGPALRSLENVDSSKFVEIDNDTNKLALKHDTLLP DARESVSQKQDKIEEKGPSKPIAPCGKSALAGNGMDTTSLLKNDLAGVKTSAFPVMSTFAQAPVQKKRAFQMSAQEDFLELDDDDYSNGTASGMLAEGRE KVDTKLVEKKTIVAEAVVVEKSPVQSEVNSPSSYTLNKKNAGIDGSVVVEKSIGFISPAAPLPTITDKQAAVNKLESISDEVALPKYSNALPQIFSTAEK VALPKEPNGTSQFFHFSNRTGDKAAPLTLTSVMSDPSGQKLGVSSDAGPKGFSFTPIATGATELVTRDPGLDKGDDKDSLKIGNSFRTAENVPSTSISSN GSLFSFGITSNSSSLNNGFLASTTPSSFSSPSLPLFSSNLTGQKSSSIPSNSVASSSTNATTTAFTAASTNGNSNFSVSASASEPTLTAASIFKFGTVSS NSVLTVPSITTETTEVKTKETSFSASSGTSSAMTSTTGSIFGGTSAITNAGNNIFGDTTAVTGKENSVFGGTSPAVTSTESSVLNATSAVMSTGSGPFNF NAGSTTSAATNQSQGFNPFNAGTTQVSAAGTGLATSTQSMPMQFSSPASTASSAFSSGSSTFGYVNTAFSSGSSTFGSSTSKLLSSGTTFGLNSSTSESS SVSSMASPASAVFGSNWQAPKSTGFSSTPSSSSSTLFAFGATSNTGTSSAPMVFGSTSSVSSAPPFPFSSPASATPSQSVFGAPNPSFGFGSSSGNNDQM SMEDSMAEDTVQATAPSVSVFSQQPTAPGSIFGFSAPSGGNQFGSTGPPGANPFQFGSQPNLAAPQNPSFQASGSLEFNAGGSFSLGTGGGDKSHRKFVR VKKTQRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	0	1
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	1.41	0.8874
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	3.16	0.8874
AT3G62010			unknown protein		Potri.002G184400 [exp]	4.47	0.8830
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	4.89	0.8809
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	5.29	0.8801
AT4G39420			unknown protein		Potri.007G078650 [exp]	6.32	0.8776
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	7.41	0.8829
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	10.67	0.8595
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	11.22	0.8773
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	11.83	0.8771

Compare expression of checked genes

Potri.008G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.