Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22040 150 / 1e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G001700 [exp] 498 / 1e-180 AT5G22040 155 / 7e-46 unknown protein Potri.010G244600 [exp] 395 / 5e-140 AT5G22040 162 / 3e-48 unknown protein Potri.002G192800 [exp] 49 / 1e-06 AT3G62330 468 / 1e-162 Zinc knuckle (CCHC-type) family protein (.1) Potri.014G118100 [exp] 48 / 4e-06 AT3G62330 424 / 1e-145 Zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008373 [exp] 154 / 2e-45 AT5G22040 232 / 1e-75 unknown protein Lus10000457 [exp] 121 / 1e-32 AT5G22040 204 / 1e-64 unknown protein Lus10010000 [exp] 46 / 1e-05 AT3G62330 421 / 3e-144 Zinc knuckle (CCHC-type) family protein (.1) Lus10025019 [exp] 44 / 0.0001 AT3G62330 415 / 1e-141 Zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G015500.2 pacid=42808373 polypeptide=Potri.008G015500.2.p locus=Potri.008G015500 ID=Potri.008G015500.2.v4.1 annot-version=v4.1 ATGAACCCGTATGGCGGAAGTGGACAAAGAATGAGAGGAAATGCAGGGGCAATGAGTAATAGTTATGGAGGAGGAGGAAGGCAAGATGGGTACTCTAGTG TGGAGGCAGAGCAGCATCCTGGGTATAAATCTTCAATAGCTGAAGGGCAGTGGCAGTGGGACAGAGATTCACAGAATGTTCACAATCAATTGCCTACTCA TACTTTCAGTGAAGGTCAAGTGGGTTCTGGGGCAAGATCTTACTACCATGGGCAGCCACCTGATCCGAAAATGGGTCTAGAAAGTCAATCCAACAAGGAA GCTGGTGGAACCCAGCCCCATGACCAAGATATGGAGCTTGGCTTTGAGGACACTTCATTGCCAATGTCTTTTGAAAATCTTGAAAGGAAGTTCTTTGATG AAGTAACGAAATTGGCAAAGGAGCAAGGTGATGCAGAGGTTGCCGAAAATGCTAGGCATAGGGAGAATATTATTGAGATCAATACCAGATACCAGGACAA ACTTTCCGCACTTCGAGCTCAACAAGCCAATAGACGAGAAGAGTTTCTTAGGAAGGAATCACAAGCACGACTAAGTCAGTACCAACAAGCCAGCATGAGC CACTACCCAAACTCAGGTTTGCAGGATGCCCGTGGCTATAGTGGTGCAGCTGCTACAGGACCCATCAGTGCTGGAGAAACACATCGGGCTTATGCCAGCA GTCAATTTGAGTCATACCAGGGACGACCTCAGTACGGTGGGGGTGGAAGAGCTCAAGGAAATGAGGGAAGGATTCCATACCCTGAGGGCCGTGTTTACAA TAATGCCGGAGCCAGACATTACTAG
AA sequence Show only first row Show all	>Potri.008G015500.2 pacid=42808373 polypeptide=Potri.008G015500.2.p locus=Potri.008G015500 ID=Potri.008G015500.2.v4.1 annot-version=v4.1 MNPYGGSGQRMRGNAGAMSNSYGGGGRQDGYSSVEAEQHPGYKSSIAEGQWQWDRDSQNVHNQLPTHTFSEGQVGSGARSYYHGQPPDPKMGLESQSNKE AGGTQPHDQDMELGFEDTSLPMSFENLERKFFDEVTKLAKEQGDAEVAENARHRENIIEINTRYQDKLSALRAQQANRREEFLRKESQARLSQYQQASMS HYPNSGLQDARGYSGAAATGPISAGETHRAYASSQFESYQGRPQYGGGGRAQGNEGRIPYPEGRVYNNAGARHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22040			unknown protein		Potri.008G015500 [exp]	0	1
AT5G22040			unknown protein		Potri.008G001700 [exp]	1.41	0.8965
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	1.73	0.8881
					Potri.005G130601 [exp]	4.00	0.8259
AT1G01730			unknown protein		Potri.015G145000 [exp]	4.00	0.8458
AT3G59670			unknown protein		Potri.005G144800 [exp]	6.48	0.8304
					Potri.013G037900 [exp]	8.06	0.8169
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	12.00	0.8229
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	12.84	0.8079	MBD905,Pt-MBD5.1
AT3G61800			unknown protein		Potri.014G099300 [exp]	16.91	0.8194
					Potri.001G407401 [exp]	17.14	0.7883

Compare expression of checked genes

Potri.008G015500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.