Plant FIBer expression Database

Potri.008G015700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11760 664 / 0 unknown protein
AT5G04860 662 / 0 unknown protein
AT2G10560 260 / 3e-81 unknown protein
AT2G25460 126 / 7e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G244100
[exp]
1213 / 0 AT3G11760 657 / 0.0 unknown protein
Potri.006G201200
[exp]
825 / 0 AT3G11760 818 / 0.0 unknown protein
Potri.016G067600
[exp]
802 / 0 AT3G11760 803 / 0.0 unknown protein
Potri.018G027200
[exp]
355 / 1e-113 AT3G11760 327 / 5e-103 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021254
[exp]
708 / 0 AT3G11760 793 / 0.0 unknown protein
Lus10013598
[exp]
692 / 0 AT3G11760 759 / 0.0 unknown protein
Lus10016183
[exp]
654 / 0 AT3G11760 771 / 0.0 unknown protein
Lus10029364
[exp]
639 / 0 AT3G11760 733 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0154 C2 PF10358 NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence
>Potri.008G015700.1 pacid=42806682 polypeptide=Potri.008G015700.1.p locus=Potri.008G015700 ID=Potri.008G015700.1.v4.1 annot-version=v4.1
ATGGTGGTGAAGATGATGAGGTGGCCACCATGGCCACCTCTGTCATCAAGAAAATTTGAGGCCAAAGTGATCATTCACAAACTGCAAGGCCTGAATTTGG
TGCAAGATGTAGAACAAAATGATGATGAGAGCAAGAAGAGGTTTGTGGTTGAGATGAAGTGGAAAGGTCAAAAGGGTATTGCTTTAAGGAGGTCTGCAAA
GAGGAATTTTACTGAGGAAGGTGGGTTTTGTGGTGATGGGGTTTTTGAATGGAATGAAGAGTTTAAAAGTGTTTGTAATCTTTCTGGAAATAAAGATGGT
GTTTTTCTTCCTTGGGAGATTGCATTCGCAGTTTTCAGTGGCATGAAACAAGGGCCAAGGAATAAGGTTATTTTAGTTGGAACTGCTACATTAAACCTCG
CGGAATATGCTTCAACAGCCAAGGAGAGAGAAGCCAAAATTGATGTTCCTTTAACAGTTCACAATGGCACTGTTGAGGGCACTCCCTTGCTTCATTTGTC
TCTCAAGTTGATGGAATTGAGAACTATTCAAGAACCTCTACAAGCACCACAGAGAGTGATAGAGACTGCCCCACCCTCACCCTCTTCTCTAGAAACTTTA
TCACCAAGGAGAGATGAGCTTTCTGTCCTTAAAGCAGGTCTGAGAAAAGTGAAAAGCTTCCAACTGACAAAAAAGGCTTGTCATGAAGAGAACAATTATG
ATAGGTGTTGTGTCAGAAGTGAAGATGCCGAGGACAACTATCCATTTGATACAGATTCACTCGACAATGATGGGGAATCAGAGGAGAGTAATTGGGATTC
TAGTGCTCAGTTACCATTCAATTATGAAACTTTGGGGCATGCAAACAAGGCTGGAGGATCATTTTACTCTAATGCCATAACTAATGCTGAAGATGAGAGT
TGGATATACTATAAGCACCGTAAACAAGATATGGGATCTCTGTATGTTGAGTCCTCAACTGCATCAGACCATGAACAGTCTTTGAGACAGAGTTCAATAC
GTGGAATCTTAGCTTGGAGGAAAAGGAAACTAAGTTTTATATCTGCAAAGCCTAAATCTAAAGGAGAGCCTCTCTTGAAAAAGGATTGTGGAGAAGGTGG
TGATGACATTGATTTTGATCGCAGGCAGCTTAGCTCCTCTGATGAGTCCAGTTCTGGGTGGAATAAATTGGAAGAAGGTTCCAGTACTAGTAGATCATCA
TTCTCTGAATTTGGGGATGACAAATTTGCTGTCGGCAGCTGGGAGGCAAAAGAAGTAATAAGCCGTGATGGGCACATGAAGCTCCAAGCGCAAGTATTTT
TTGCTTCAATTGATCAAAGGAGTGAGCGAGCTGCAGGAGAGAGTGCCTGTACAGCCCTGGTTGCTGTCATTGCTAATTGGTTGCAATCTAACCAATATGA
AGTGCCAATCAAGTCTGAGTTTGACAGCTTGATCAGAGTTGGATCTTTAGAGTGGAGAAACTTGTGTGAGAAAGAGGACTATAGACAACGATTTCCCGAC
AAGCACTTTGATCTTGAGACAATTCTCCAAGCTAAAATCCGTCCTCTTTCAGTAGTCCAAGAAAAGTCGTTTATTGGATTCTTTCATCCAGAAGGCCTAG
AAGAAGGGGATTTTGACTTCCTTCATGGTGCAATGTCCTTTGACAGTATTTGGCAGGAGATTAATCATCATGGGTTAGACTTGTCTAGTAATTGTGATCC
TTTCATCTACATTGTAAGTTGGAATGACCACTTCTTTGTCCTCAAGGTTGAGCAGGATGCCTACTATATCATTGACACATTGGGTGAGAGGCTTTACGAG
GGATGTAATCAAGCCTATGTCCTAAAATTTGACAAAGATACAATAATCCGGAAACTACCAATGGAAACTAAAGAATCAGATGAAAAAACTTCGGGCAACA
AAGTGCAACCAAGCAGCTCCAAGGAAAAAACTCGGGCTGAAAGGAGGTCGCCATCAAGTCCAAATGAATGCGAAAAGACTCTGATGGAAGAAGAAATTGT
GTGCAAAGGAAAGGAGTCATGCAAGGAGTATATTAAGAGCTTCTTGGCTGCAATCCCTATAAGGGAATTGCGGGCTGATATGAAGAAGGGTTTGATGGCA
TCAACACCCCTTCATCATCGGCTTCAAATTGAGTTCCACTACACCCAGCTGACACAACCTGTAGATGAAAATTCATCAAGAGATGTAACAATTTGCTGA
AA sequence
>Potri.008G015700.1 pacid=42806682 polypeptide=Potri.008G015700.1.p locus=Potri.008G015700 ID=Potri.008G015700.1.v4.1 annot-version=v4.1
MVVKMMRWPPWPPLSSRKFEAKVIIHKLQGLNLVQDVEQNDDESKKRFVVEMKWKGQKGIALRRSAKRNFTEEGGFCGDGVFEWNEEFKSVCNLSGNKDG
VFLPWEIAFAVFSGMKQGPRNKVILVGTATLNLAEYASTAKEREAKIDVPLTVHNGTVEGTPLLHLSLKLMELRTIQEPLQAPQRVIETAPPSPSSLETL
SPRRDELSVLKAGLRKVKSFQLTKKACHEENNYDRCCVRSEDAEDNYPFDTDSLDNDGESEESNWDSSAQLPFNYETLGHANKAGGSFYSNAITNAEDES
WIYYKHRKQDMGSLYVESSTASDHEQSLRQSSIRGILAWRKRKLSFISAKPKSKGEPLLKKDCGEGGDDIDFDRRQLSSSDESSSGWNKLEEGSSTSRSS
FSEFGDDKFAVGSWEAKEVISRDGHMKLQAQVFFASIDQRSERAAGESACTALVAVIANWLQSNQYEVPIKSEFDSLIRVGSLEWRNLCEKEDYRQRFPD
KHFDLETILQAKIRPLSVVQEKSFIGFFHPEGLEEGDFDFLHGAMSFDSIWQEINHHGLDLSSNCDPFIYIVSWNDHFFVLKVEQDAYYIIDTLGERLYE
GCNQAYVLKFDKDTIIRKLPMETKESDEKTSGNKVQPSSSKEKTRAERRSPSSPNECEKTLMEEEIVCKGKESCKEYIKSFLAAIPIRELRADMKKGLMA
STPLHHRLQIEFHYTQLTQPVDENSSRDVTIC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11760 unknown protein Potri.008G015700
[exp]
0 1
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.016G034400
[exp]
1.41 0.8878
AT5G24010 Protein kinase superfamily pro... Potri.004G079700
[exp]
1.73 0.8708
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.016G034600
[exp]
2.00 0.8718
AT1G76520 Auxin efflux carrier family pr... Potri.011G145700
[exp]
3.31 0.8449
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G015700
[exp]
4.47 0.8472
AT5G63930 Leucine-rich repeat protein ki... Potri.019G025500
[exp]
4.58 0.8512
AT2G37730 Protein of unknown function (D... Potri.016G101200
[exp]
4.89 0.8502
AT3G28345 MDR13, ABCB15 multi-drug resistance 13, ATP-... Potri.017G074000
[exp]
5.47 0.8522
AT4G27290 S-locus lectin protein kinase ... Potri.011G154400
[exp]
5.91 0.8651
AT5G06570 alpha/beta-Hydrolases superfam... Potri.016G065000
[exp]
7.74 0.8135

Potri.008G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.