Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73970 695 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000648 [exp] 844 / 0 AT1G73970 701 / 0.0 unknown protein Lus10036972 [exp] 782 / 0 AT1G73970 622 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G016000.5 pacid=42808011 polypeptide=Potri.008G016000.5.p locus=Potri.008G016000 ID=Potri.008G016000.5.v4.1 annot-version=v4.1 ATGGCCAGACAGACTAACACACTTTTCCTTGAAGAATGGCTGAGGATCAGTAGTGGTAGCAGCAGCAACACTTCTGCAGACCAATCTTCTTCATCGTCTG CCCGTGCCATCATTCAAGCATGGGCTGAGCTTAGAGACTGCCATCAACACCAATCATTTGAGCCCCATCACTTTCAGTCTTTGAAAATTCTTCTTGATGC TCGCACATCCCTTCATGTCGCTGAACCCCAAGCGAAGCTTCTAGTTTCAATTTTATCCTCCACAAACCTCGTCATTCCTCTTGAGGCATATCCTCTCCTT CTCCGGCTTCTTTATATCTGGGTCAGAAAGTCCTTTAGACCGTCTTCTGCACTCATTGATTCGGCTGTGGAGACACTGTCTCACCTTTTAGCTACTGAAT TGGGTTCTAAGAAGAGCCCTGAGTTTTTCTCAGAGGGTGTACTGCTACTGGGTGCCTTTTCTTCTGTGCCTTCTGTTTCAGAATCCTCTAAAACAGTCTG CTTGGAGTTGCTCTGTAGGTTATTGGAGGATGAATACAGACTGGTTAGTCCATTTGGTGGCCTCATTCCAGATGTTCTTGCAGGTATTGGGTATGCTCTA TGTTCTTCTGTGATTGTTTATTATGCTAGAACTTTGAATGCATTGCTGGGGATCTGGGGAAGGGAAGATGGACCGCCTGGTAGTGTTTCTCATGGGCTCA TGATTTTACATTTGGTTGAATGGGTAATGTCTAGTTTCATCAAGTCACGTTCACAAGATAAATTGCAAATATTTTCTAAAGAGACTTTAGACACTTCGAG GAAAGACCATGTTCCATTTGCTGTTGTCATGGCTGCTGCTGGTGTTCTGAGAGCATTGAATAGATCTGCACCAAGTCAACAGGGATTGCAGATCCTTTCC AGCCTAAGGATTTCTGCAGAAAATAGGATTGAGTCAGTGGCACAATATTTTATTTCTAAAAGTAGAGACTATGATAATTCAGGTGATGATTATGCAACCA GTATATTGCTTCAGTGCATTTCATTAGCTTTGGCTCGAAGTGGTTCAGTGTCTTCCCGGCCTCCTCTGCTTCTATCCCTTGCTTCAGCATTATTAACTGA GATATTTCCTTTGCGGCGTCTACATGCAAGGATTCTTGAGTCAACACATGGAAGTTCAGGGGGACTTGAGCCTGGCAAGATTAAAGAACATCTAAGCAGT GTCACTTTTAAGGAAGCAGGGGCAATTAGCAGTGTTTTCTGCAGTCAATACATTTCAGCAGACGACGAGAACAAGATGATAGTGGAAAATATGATATGGC GATTCTGCCAAGAACTCTACTCAGGGCATCGGAAGGTGGCTTTCTTGCTACATGGGAAAGCAGATGAGTTGCTTGAAGATGTAGAGAAAATTGCTGAGTC TGCTTTCCTTATGGTCGTGGTGTTTGCATTGGCTGTTACAAAGCAGAAACTGAATTCAAAATTCTCAACTGAAAGTCAGATGGAGACATCTGTCTTGATA CTAGTTTCATTCTCCTGTTTAGAGTATTTCCGGCGTATGCGTTTGTCAGAATATATGGATACAATACGAGGGGTTGTTGTGAGTGCACAGGAGAATGAGA CTGCATGTGTCTCATTTGTAGAGTCTATGCCCACTTATGTTGATCTGCCAAATCCTCAAGAATTCCAGCAGAAAGTGGACTACATATGGTTCAAGGATGA AGTGCAGACCGCCCGCATTTTGTTTTACCTGCGGGTTATTCCGACTTGCATTGAACGTTTGCCTGGATCTGTTTTTAGCAGAGTTGTCGCTCCAACAATG TTCTTATATATGGGACATCCAAATGGAAAAGTAGCTCGAGCTTCACATTCTATGTTTGCCGCATTCATATCCTCGGGGAAGGACTCTAATGAGAATGAAA GATCATTACTGAAGGAGCAACTTGTTTTCTACTACATGCAGAGATCTTTAGCAGGATTTCCTGGTATCACTCCTTTTGAGGGTATGGCTTCTGGAGTTGC AGCCTTGGTTCGAAATCTTCCTGCTGGAAGTCCAGCCACATTTTATTGTATCAACAGTCTCGTTGAAAAAGCAAGCAAGCTCTGCACTGATATTGCCACC CAAAAGCCTGATATGTGGAAAAATTGGGAAGGGGAATCAGAGCCTTGTAAGAAAATCTTAGAATTGCTTTTACGGCTTATTTCCCTTGTTGATATACAAG TACTGCCAGACTTGATGAAGTTGTTGGCGCAGCTACTTGTTGAGTTACCAAAAGAAGGACAGAATGTGGTTCTAAATGAGTTATATGCACAGGTTGCTGA GTCTGATGATGTTACACGCAAGCCAACATTAGTTTCATGGCTGCAGTCAGTATCGTACCTTTGTTCTCAATCAACTAGTGGAAGTGCACCATCAAAAGGC ATTGGGGGTGAAGGAAGTTCTGCTTCATCTCTTAGAGACCCATCAAACTGGAATGGAATAAACGCAAGACTGTGA
AA sequence Show only first row Show all	>Potri.008G016000.5 pacid=42808011 polypeptide=Potri.008G016000.5.p locus=Potri.008G016000 ID=Potri.008G016000.5.v4.1 annot-version=v4.1 MARQTNTLFLEEWLRISSGSSSNTSADQSSSSSARAIIQAWAELRDCHQHQSFEPHHFQSLKILLDARTSLHVAEPQAKLLVSILSSTNLVIPLEAYPLL LRLLYIWVRKSFRPSSALIDSAVETLSHLLATELGSKKSPEFFSEGVLLLGAFSSVPSVSESSKTVCLELLCRLLEDEYRLVSPFGGLIPDVLAGIGYAL CSSVIVYYARTLNALLGIWGREDGPPGSVSHGLMILHLVEWVMSSFIKSRSQDKLQIFSKETLDTSRKDHVPFAVVMAAAGVLRALNRSAPSQQGLQILS SLRISAENRIESVAQYFISKSRDYDNSGDDYATSILLQCISLALARSGSVSSRPPLLLSLASALLTEIFPLRRLHARILESTHGSSGGLEPGKIKEHLSS VTFKEAGAISSVFCSQYISADDENKMIVENMIWRFCQELYSGHRKVAFLLHGKADELLEDVEKIAESAFLMVVVFALAVTKQKLNSKFSTESQMETSVLI LVSFSCLEYFRRMRLSEYMDTIRGVVVSAQENETACVSFVESMPTYVDLPNPQEFQQKVDYIWFKDEVQTARILFYLRVIPTCIERLPGSVFSRVVAPTM FLYMGHPNGKVARASHSMFAAFISSGKDSNENERSLLKEQLVFYYMQRSLAGFPGITPFEGMASGVAALVRNLPAGSPATFYCINSLVEKASKLCTDIAT QKPDMWKNWEGESEPCKKILELLLRLISLVDIQVLPDLMKLLAQLLVELPKEGQNVVLNELYAQVAESDDVTRKPTLVSWLQSVSYLCSQSTSGSAPSKG IGGEGSSASSLRDPSNWNGINARL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73970			unknown protein		Potri.008G016000 [exp]	0	1
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	1.41	0.8848
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	2.00	0.8934
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	3.16	0.8467
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	5.19	0.8391
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	6.00	0.8326
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	7.14	0.8269
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	7.61	0.8100
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	10.53	0.8593
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	10.81	0.8322
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	12.72	0.8254	ATMRP12.4

Compare expression of checked genes

Potri.008G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.