Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03700 478 / 2e-166 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 93 / 4e-20 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G51710 92 / 7e-20 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT4G32300 91 / 3e-19 SD2-5 S-domain-2 5 (.1) AT1G78860 89 / 5e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 81 / 2e-16 Curculin-like (mannose-binding) lectin family protein (.1) AT5G35370 79 / 2e-15 S-locus lectin protein kinase family protein (.1) AT1G61550 76 / 3e-14 S-locus lectin protein kinase family protein (.1) AT1G78830 68 / 6e-12 Curculin-like (mannose-binding) lectin family protein (.1) AT4G00340 66 / 3e-11 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027300 [exp] 100 / 3e-22 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 97 / 5e-21 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G013797 [exp] 94 / 4e-20 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.016G132500 [exp] 91 / 2e-19 AT3G51710 464 / 2e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 88 / 1e-18 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 87 / 2e-18 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 87 / 2e-18 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 87 / 4e-18 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 86 / 8e-18 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014371 [exp] 464 / 3e-160 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10023868 [exp] 461 / 5e-159 AT5G03700 458 / 3e-158 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 84 / 7e-17 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 84 / 8e-17 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 81 / 1e-15 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000579 [exp] 76 / 1e-14 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10006052 [exp] 74 / 1e-13 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10018405 [exp] 74 / 1e-13 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10009088 [exp] 72 / 4e-13 AT3G51710 360 / 1e-119 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10022495 [exp] 69 / 4e-12 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G016900.1 pacid=42808142 polypeptide=Potri.008G016900.1.p locus=Potri.008G016900 ID=Potri.008G016900.1.v4.1 annot-version=v4.1 ATGGAAAAGAAACCAGTAAACTCAGCAACCCGATCACTTGCCACTCAGCTTCTCTTCCTCATTTCAAGTATTCTCTACACGTGCACTTCGGCCACAGCCC AAGAGCTTCTCGCTGGCTTCAAAGCCAACCCAAGTTCATCAGTCTCATCCTTTCAGTCTCTCTTGAATGACTCAACAAGCACCTTTTCTCTAGGTTTCCT CCGAGTCAACCAAACCCAACTCGCCCTCACAGTCATCCACCTCCCTTCCCTCCAGCCACTCTGGCAGGCTAACCCAACAAGCTCGTTTCGTTGGTCAGAC AAGACCCAGCTCTTCTTCAATGGTAGTCTTGTGATATCTGATCCACACAAGAGGTCATTTTGGTCCACAGGAACGTCCCAACAAGGTGACAAAGTTGTCC TCCTGAACTCCTCAAACCTACAAATACTACAAAAACAAGTTGTTCTCTGGCAAAGTTTCGATTTTCCCACAAGTACCCTCGTCGAGAACCAGAATTTCAC TTCCAACATGTCTCTCGTCTCCCCCAATGGGCTTTACTCCATGCGCTTAGGAGATGACTTCATGGCCCTATACGCAAGGTTCAAAGATGGGAAAACGCAA CAAATGTACTGGAAACACAAAGCCTTGGAAGCTAAAGCAGAAGTTGTTCAAGGACAAGGTCCGATCCATGCCCGACTCGAATCCGATGGGTTTTTGGGCA TGTACCAAATGGGAAAAACCCCGGTGGATATTCAACCTTTCAACAGCTTTCATCGACCTATTGACAGATTCCTGATGGTCCAGTTAGAACCGGACGGGAA CCTCAAAGGCTATTACTGGGCTCAAACCGACTGGGTCTTGGACTACCAGGCTATCACTGAAACGTGTGAGTTGCCCAGTCCCTGCGGTCCCTACGGTTTG TGCAGAGCCGGGTCGGGCTGCTCCTGCTTGGATAACCGGACCCAGGTGGACACTGCGTCATTTCAGTGCATTGATGGGGATGATCAGTCCGGCGATTTTT GCAGTGGAAGTGATGATTTCTGGGTTCTGAGAAGGAAAGGGGTGGAGTTACCGTTTAAGGAGTTGATGGATTCGGACACAACATCATCATCCGTGGAGGA ATGTGAGCTGTCTTGTCAGAGGAACTGCAGCTGCTGGGGTGCAGTTTACAACAACGCAACCGGGTTTTGTTACACTTTGAATTACCCGATCCAAACACTG GTGGGTGTGGGTGATGAGAGTAAAGTCGGGTATTTCAAGGTGAGAACCAAACGTAGTTGGCATAAGAAAATGAAAGTCGGTATTCGGGTTCTTGGGGCGG TTATTGTGGTTCTGACCGGAGTTGTGCTTGGGTATGGAGGTTATAAGATCTGGAATAGGAGAAGAAGAGGGCCTAAACGGGTCTTGGAGGAGAAGACCGA GGTATCACCCGGCCCGTATAAAAATCTCGGGTCGGCTAGTTTCAAGTCTATCGAGATGTTTTAG
AA sequence Show only first row Show all	>Potri.008G016900.1 pacid=42808142 polypeptide=Potri.008G016900.1.p locus=Potri.008G016900 ID=Potri.008G016900.1.v4.1 annot-version=v4.1 MEKKPVNSATRSLATQLLFLISSILYTCTSATAQELLAGFKANPSSSVSSFQSLLNDSTSTFSLGFLRVNQTQLALTVIHLPSLQPLWQANPTSSFRWSD KTQLFFNGSLVISDPHKRSFWSTGTSQQGDKVVLLNSSNLQILQKQVVLWQSFDFPTSTLVENQNFTSNMSLVSPNGLYSMRLGDDFMALYARFKDGKTQ QMYWKHKALEAKAEVVQGQGPIHARLESDGFLGMYQMGKTPVDIQPFNSFHRPIDRFLMVQLEPDGNLKGYYWAQTDWVLDYQAITETCELPSPCGPYGL CRAGSGCSCLDNRTQVDTASFQCIDGDDQSGDFCSGSDDFWVLRRKGVELPFKELMDSDTTSSSVEECELSCQRNCSCWGAVYNNATGFCYTLNYPIQTL VGVGDESKVGYFKVRTKRSWHKKMKVGIRVLGAVIVVLTGVVLGYGGYKIWNRRRRGPKRVLEEKTEVSPGPYKNLGSASFKSIEMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03700			D-mannose binding lectin prote...		Potri.008G016900 [exp]	0	1
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	1.00	0.9525
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.010G024500 [exp]	1.41	0.9457
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	6.48	0.9152
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G128100 [exp]	10.29	0.8813	2OGox5
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	11.35	0.9456
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	12.00	0.9389
AT3G05858			unknown protein		Potri.010G003900 [exp]	15.29	0.9258
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.007G121200 [exp]	19.59	0.9113	COL13.2
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	20.49	0.9332
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078501 [exp]	20.85	0.9217

Compare expression of checked genes

Potri.008G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.