Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 1277 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 237 / 3e-66 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 233 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 233 / 5e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62910 231 / 6e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 234 / 8e-65 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12300 229 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 234 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 231 / 4e-64 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G54980 232 / 6e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241300 [exp] 1601 / 0 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G069600 [exp] 264 / 4e-76 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 256 / 2e-73 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139300 [exp] 251 / 4e-71 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 248 / 1e-70 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 247 / 3e-69 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G050500 [exp] 242 / 4e-69 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G250700 [exp] 247 / 5e-69 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 243 / 2e-68 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034149 [exp] 1293 / 0 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008969 [exp] 1221 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 1218 / 0 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 711 / 0 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028851 [exp] 360 / 9e-116 AT5G04810 312 / 3e-98 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 257 / 2e-73 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 247 / 2e-69 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019524 [exp] 246 / 1e-68 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 236 / 2e-65 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 230 / 4e-63 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G017400.1 pacid=42808351 polypeptide=Potri.008G017400.1.p locus=Potri.008G017400 ID=Potri.008G017400.1.v4.1 annot-version=v4.1 ATGGATATTTTGCCTCTCTCCACCATCCCGCACTTTCCTCATTGCCCCCCTCCTTTCTCCTCCAACACCACCACCACCACAACCACCGCTTCCATTTCTT TCTCCCTCAAACCACCACCTCCACCGCCACCAGAACCCACCAATTCTTCCTCTATCCGCCGTCCCAAATCACTCAATCCCACCCCCGCCCCAACCCCCAC CCCAACCCCCACCCCCGCCCCCACAACTCCTAAAATCCCCCAAAACCCACTCAAAACCCTCCTTAACCCCTCCAAACCCCAAATAACAAGCTCCAGTGCC ACTAGCACCACCGACCCTCTTTCTCTCTCCACCAAACTCCGCCTCTCCAGCAAACTCTCTCACCCACCACCGCCGCCGCCGCCACTTGAAACCACTCGAA CCCCAGAAGCTGAAACCCAAGAGACTCGAAAAGTAGAAAATGAAGCCCCCAAAACTGATTTCTGCCAAAAAGGGAAGATCTTTATTGGAAATTTACCAAA CTGGATAAAAAAACACGAACTTTCTGAATTCTTTCGCCAATTCGGTCCTATAAAGAATGTAGTTTTGATAAATGGTCATAATGAGACTGAAAGGAATGCT GGTTTCGGGTTTATTATCTATGATGGTCCAACTGCAGAGAAGTCTGCAATGAAAGCTGAGGAATTTGATGGAATGGAGTTTCATGGGAGGGTTTTGACTG TGAAATTGGATGATGGGAGAAGATTGAAGGCGAAAGCAGAGGAAAGGAAGAATTGGGTTGATGGAGAGGATGGGGGTGACTATAGGTCTAAATGGCACGA AGAAAGAGAAGGGTCTACAAAGGCTTTTCGGAAGGTTTTAGACACGCAACCGGAGAATTGGCAGGCAGTTGTTAGTGCTTTCGAAAGGATTAAGAAGCCT GCTAGAAGGGAGTTTGGATTAATGGTGGGTTACTATGCGAGGCGAGGGGATATGCATCGTGCACGACAAACTTTTGAGAGCATGCGAGCAAGGGGAATAT ATCCGAGTTCACATGTCTATACAAGCCTTATTCACGCTTATGCAGTTGGTAGAGACATGGAAGAAGCACTGTCTTGTGTTAGGAAAATGAAGGAAGAGGG TGTTGAAATGAGCCTGGTGACATATAGTATAGTTGTTGGAGGATTTGCCAAAATTGGCAATGCTGAAGCTGCAGAGCACTGGTTTAAGGAGGCCAAAGAG AGGCATACAAATTTGAATGCAATCATTTATGGGAGCATTATATATGCTTATTGTCAGTCATGCAATATGGATCGAGCTGAATCTTTGGTGAGGGAGATGG AAGAAGAAGGTATAGATGCTCCTATTGACATATATCATACCATGATGAACGGTTACACTATGATTGGAAATGAAGAAAAATGCCTGATTGTATTCAAAAG GCTTAAGGAATGTGGATTTGCTCCTTCAGTGATTAGCTATGGATGTCTCATCAATATGTACACCAAGATAGGTAAAGTTTCTAAAGCCCTGGAGGTTAGC AAAATGATGGAATCAGCTGGCATAAAGCATAACATGAAGACGTATTCCATGTTGATCAATGGGTTCTTGAAGTTAAAGGATTGGACCAATGCATTTACAG TTTTTGAAGATGTTATCGAAGATGGTTTGAAACCTGATGTGGTTCTCTATAATAACATTATCAAAGCATTCTGTGGAATGGGAAATATGGATCGTGCCAT CCATATGGTGAAGGAAATGCAGAAGAAAAGACATCGGCCTACTTCACGTACATTTATGCCCATTATACATGGATTTGCAAGAGCTGGGGAAATGAGGAGG GCCCTAGAAATTTTTGATATGATGAGGCGGAGTGGGTGCATTCCAACTGTGCACACCTTCAATGCTTTGGTTCTCGGCCTTGTTGAGAAGCGTCAGATGG AGAAGGCTGTTGAAATATTGGATGAGATGGCATTGGCAGGTGTAAGTCCAGATGAACACACATACACGACAATCATGAATGGTTATGCAGCATTAGGTGA TACTGGAAAGGCCTTCGAGTATTTTACCAAATTAAGAAATGAAGGACTAGAACTTGATGTGTTTACATATGAGGCATTGCTCAAGGCATGTTGCAAGTCA GGCAGGATGCAAAGTGCTTTAGCAGTTACAAGAGAAATGAGTGCTCAAAATATCCCAAGAAACACCTTTGTCTATAACATATTAATCGATGGATGGGCTC GAAGAGGTGATGTTTGGGAGGCTGCTGACCTTATGCAGCAAATGAAGCAAGAAGGGGTTCAACCTGATATTCATACATATACATCCTTTATAAATGCTTG TTGCAAGGCTGGAGACATGCTGAGAGCAACAAAAACAATACAAGAAATGGAGGCTTTAGGAGTGAAGCCAAATGTGAAAACCTACACCACATTGATTCAT GGGTGGGCATGTGCTTCTCTTCCAGAGAAAGCATTGCGCTGCTTTGAAGAGATGAAGTTGGCTGGATTAAAGCCTGATAAAGCTGTGTACCATTGCTTAA TGACATCATTGTTGTCAAGGGCTACTGTTGCTGAAGCATACATTTACTCTGGGATTCTGTCCATTTGCAGAGAAATGATAGAATCTGAGTTGACTGTAGA TATGGGGACTGCAGTTTACTGGTCCAAATGTTTACGCAAAATCGAAGGAACGGGAGGAGAGCTCACAGAAGCTTTACAGAAGACCTTCCCTCCAGATTGG AATGCGCATCACTCTCCCTCTCCCGAGGCAAACTACGAATCAGGTATTGAATCAGATATTGATGATGAACCCAGCAATGATGGTGATAATAACATGTTTT TGGCTGGTGTGAATGATGGAGATAGCGAAGATGACATCGATGATCATGATGAGAACAAGGATTTCAAACAGAGATTATGGGTTTAA
AA sequence Show only first row Show all	>Potri.008G017400.1 pacid=42808351 polypeptide=Potri.008G017400.1.p locus=Potri.008G017400 ID=Potri.008G017400.1.v4.1 annot-version=v4.1 MDILPLSTIPHFPHCPPPFSSNTTTTTTTASISFSLKPPPPPPPEPTNSSSIRRPKSLNPTPAPTPTPTPTPAPTTPKIPQNPLKTLLNPSKPQITSSSA TSTTDPLSLSTKLRLSSKLSHPPPPPPPLETTRTPEAETQETRKVENEAPKTDFCQKGKIFIGNLPNWIKKHELSEFFRQFGPIKNVVLINGHNETERNA GFGFIIYDGPTAEKSAMKAEEFDGMEFHGRVLTVKLDDGRRLKAKAEERKNWVDGEDGGDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKP ARREFGLMVGYYARRGDMHRARQTFESMRARGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNAEAAEHWFKEAKE RHTNLNAIIYGSIIYAYCQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKIGKVSKALEVS KMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIEDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRR ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS GRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIH GWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGILSICREMIESELTVDMGTAVYWSKCLRKIEGTGGELTEALQKTFPPDW NAHHSPSPEANYESGIESDIDDEPSNDGDNNMFLAGVNDGDSEDDIDDHDENKDFKQRLWV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	0	1
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	1.73	0.9718
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	2.82	0.9603
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	5.19	0.9660
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	8.12	0.9465
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	8.12	0.9316
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	8.66	0.9400
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	14.83	0.9472
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	15.71	0.9336
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	17.32	0.9436
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	18.70	0.9409

Compare expression of checked genes

Potri.008G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.