Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 163 / 6e-50 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 104 / 3e-27 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 94 / 5e-23 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT1G79960 66 / 1e-12 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT1G05420 65 / 1e-12 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT4G14860 57 / 3e-10 OFP ATOFP11 ovate family protein 11 (.1) AT3G52525 54 / 4e-09 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT5G22240 54 / 5e-09 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT2G32100 54 / 9e-09 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT2G18500 53 / 3e-08 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241500 [exp] 301 / 7e-105 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 187 / 5e-59 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 184 / 4e-58 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 129 / 3e-37 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G153500 [exp] 88 / 2e-21 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 82 / 7e-19 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.005G211300 [exp] 79 / 9e-18 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.002G051200 [exp] 77 / 5e-17 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 70 / 3e-14 AT1G79960 137 / 2e-38 ovate family protein 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043433 [exp] 155 / 9e-47 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10034150 [exp] 144 / 2e-42 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 117 / 2e-31 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10016979 [exp] 110 / 1e-29 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043406 [exp] 96 / 7e-25 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10010554 [exp] 71 / 6e-15 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 71 / 4e-14 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006912 [exp] 69 / 5e-14 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10014677 [exp] 69 / 5e-14 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10035891 [exp] 61 / 1e-10 AT1G79960 166 / 2e-48 ovate family protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Potri.008G017500.1 pacid=42807334 polypeptide=Potri.008G017500.1.p locus=Potri.008G017500 ID=Potri.008G017500.1.v4.1 annot-version=v4.1 ATGAAGATCCCTGCACTGTTCAAGATCAAAGAAACAAAGCAATCATGGCAAAAATGGCCTTCATGCAAGCACCCCAAGACTCTTTCTTTCAGGGGTGGAG ATGATGTGATCAAGACTGTAAATTCAGTTTTCTTTGATCCTTCTGAAAGGGTTGAGACACCAGAGTCATGGTTCACAAACTCATCAGAAACTACAAGTTT CTCAACTGAGTCGGAGGGCTTTGATGGGGAGTCGTTGGAGGTTGTTGTACGTGGGGTGAGATCAGAAAGGTTGTTTTTTGAGCCTGGAGACACAAACTCA ATACTAGAAGAGGCAAAAACAGGAGGGTTTCCATTCAAGGAAAGTGTGGTTCTAGCAATGGAGTCAGAGGATCCATATGTTGATTTTAGAAGGTCAATGG AGGAGATGGTGGAGTCTCATGGACTTAAAGATTGGGATTGTTTAGAGGAGTTGTTGGGGTGGTATTTGAAGGTCAATGGGAAAAAGAATCATGGGTATAT AGTTGGGGCATTCGTGGATCTACTTGTTGGGATTGCAGCTGCTTCTTGTTCTGATTCCACTTCCTTTTCTTCTGCTGTTTCTTCATTTTCTCCTTCATCC CCTTTATGTTCATTGAAAGGGCATAATGAGATTGATGAGAAATAA
AA sequence Show only first row Show all	>Potri.008G017500.1 pacid=42807334 polypeptide=Potri.008G017500.1.p locus=Potri.008G017500 ID=Potri.008G017500.1.v4.1 annot-version=v4.1 MKIPALFKIKETKQSWQKWPSCKHPKTLSFRGGDDVIKTVNSVFFDPSERVETPESWFTNSSETTSFSTESEGFDGESLEVVVRGVRSERLFFEPGDTNS ILEEAKTGGFPFKESVVLAMESEDPYVDFRRSMEEMVESHGLKDWDCLEELLGWYLKVNGKKNHGYIVGAFVDLLVGIAAASCSDSTSFSSAVSSFSPSS PLCSLKGHNEIDEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	0	1
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	1.00	0.9319
					Potri.007G097650 [exp]	2.00	0.9149
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.006G230600 [exp]	3.46	0.8732
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067567 [exp]	4.00	0.8645
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	6.70	0.8746	Pt-AUX28.3
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	6.92	0.8711	Pt-CYP94.3
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	7.48	0.8691
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	10.48	0.8609
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	12.00	0.8385
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077200 [exp]	13.26	0.8405

Compare expression of checked genes

Potri.008G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.