Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03540 960 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 877 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G52350 528 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT5G50380 344 / 3e-109 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 325 / 1e-102 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 322 / 3e-101 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 307 / 9e-96 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 304 / 1e-94 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13150 271 / 6e-82 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 262 / 6e-78 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241800 [exp] 1133 / 0 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 910 / 0 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.016G071000 [exp] 901 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.015G094800 [exp] 351 / 4e-112 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 347 / 2e-110 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 340 / 4e-108 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 339 / 9e-108 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 300 / 7e-93 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.001G060700 [exp] 296 / 4e-91 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043432 [exp] 1006 / 0 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 985 / 0 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 862 / 0 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10013163 [exp] 348 / 2e-113 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 352 / 2e-112 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 349 / 3e-111 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 336 / 6e-107 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10041536 [exp] 271 / 3e-80 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 268 / 7e-78 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015757 [exp] 260 / 2e-77 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.008G017800.1 pacid=42806671 polypeptide=Potri.008G017800.1.p locus=Potri.008G017800 ID=Potri.008G017800.1.v4.1 annot-version=v4.1 ATGGTTGTGGCAGTGTCAGGCATGGATTCACTTGGTGAAAGAGCAGCAAAGATGAAAGAAGCACTTCAGAAAAGCCAAACTATTACTGATAGTGTTGTTT CAATTCTGGGATCTTTTGATAGTCGTCTTTCAGTTCTCGAGACTGCTATGCGTCCAACTCAGATTAGAACACATGCGATCAGGAAAGCTCATGAGAATAT TGACAAGACATTAAAGGCTGCAGAGGTTATATTGACACAGTTTGATGCTTCTCGGCAGGCAGAGGCTAAAATACTTAAGGGACCACATGAGGACCTAGAG AGTTACCTAGAAGCAATTGATCAGTTAAGAAGCAACATTCATTTCTTTAGTGGCAACAAAGGCTTCAAGAGTAGTGATGCAGTTCTCAATAATGCAAATA GCTTACTTGCTAAGGCTATTTCAAAGTTAGAGGACGAGTTTAAGCAGTTGTTGGCATCGTACAGCAAGCCCGTGGAACCTGATCGTCTCTTTGAGTGCCT CCCTGAATCATTGCGACCATCCTCAGAATCACCTGGAAACCTTTCTAGTGGCAGGAATCATCATCATGAGCACCAAAATGGTGCTTCGGAAACTGGTGGC TTCAAACATCTTACTCTCATACCTCCAAGGATTTTACCTTTGTTGCATGATTTAGCCCAACAAATGGTTCAAGCTGGGAACCAACAACAATTACTTAGAA TTTACAGGGATACCCGATCTTCAGTCATGGATGAAAGCCTTCGCAAGTTGGGCGTTGAAAAGCTGAGCAAAGAGGATGTTCAAAAGATGCAATGGGAGGT CTTGGAGGCCAAGATTGGGAATTGGATTCATTTCATGCGCATTGCTGTCAAGGTCCTGTTTGTTGGAGAAAGAAGAGTCTGCGATCAAATATTTGAAGGG TTTGATACTCTCCTTGATCAATGTTTTGCTGAATGTACTGCTAGTAGTGTCTCCATGCTTCTTAGTTTCGGGGATGCAATTGCCAGAAGCAAAAGGTCAC CTGAGAAGTTATTTGTACTTCTGGACATGTATGAGATAATGCGAGAACTACATTCAGAGATTGAGGCAGTTTTTGGTGGTAAAGCTTGCAATGAAATCAG GGAATCCACATTTGGTTTGACAAAAAGGCTTGCCCAGACAGCTCAAGAAACCTTTGGTGATTTTGAAGAAGCAGTTGAAAAAGATGCCACAAAAACTGCT GTTCTGGATGGGACTGTTCATCCATTGACAAGTTATGTGATTAACTACGTGAAATTTCTCTTTGACTATCAATCAACCTTGAAGCAACTCTTCCAAGAAT TTGAAAGCAGTGGCGAAACAAGTTCACAGTTAGCAACTATAACAATGCGGATAATGCAGGCTCTTCAAACCAATCTGGATGGGAAATCTAAGCAGTACAG AGATCCAGCTCTGACTCACTTATTTCTCATGAACAATATTCACTACATGGTCAGATCTGTGCGCAGATCAGAAGCCAAGGACTTATTAGGGGATGATTGG GTTCAAAGGCATAGAAGGGTTGTGCAGCAGCATGCAAATCAATACAAAAGGAATGCTTGGTCAAAGATACTTCAATGTCTCTCCACGCAAGGCCTAACCT CCTCATCTGTGGGAGGAGGTTCTGCTGTATCTGGTGAGGGAGGAAGTGGCAGTGGAGCCTCAAGAGGGTTGATCAAAGACAGATTCAAGACTTTCAATAT CCAATTTGAGGAGCTTCACCAAAAACAATCTCAGTGGACTGTTCCTGACACTGAGTTGCGAGAGTCACTAAGACTTGCTGTCGCTGAAGTCTTGTTGCCT GCCTACAGATCCTTTATAAAACGCTTTGGGCCTCTGGTTGAGAGTGGGAAGAATCCTCAGAAGTTCATTAGGTACACAGCTGAGGATCTGGAAAGAATGC TGGGGGAATTTTTTGAGGGGAAGACCTTGAATGAACCCAGGCGGTAA
AA sequence Show only first row Show all	>Potri.008G017800.1 pacid=42806671 polypeptide=Potri.008G017800.1.p locus=Potri.008G017800 ID=Potri.008G017800.1.v4.1 annot-version=v4.1 MVVAVSGMDSLGERAAKMKEALQKSQTITDSVVSILGSFDSRLSVLETAMRPTQIRTHAIRKAHENIDKTLKAAEVILTQFDASRQAEAKILKGPHEDLE SYLEAIDQLRSNIHFFSGNKGFKSSDAVLNNANSLLAKAISKLEDEFKQLLASYSKPVEPDRLFECLPESLRPSSESPGNLSSGRNHHHEHQNGASETGG FKHLTLIPPRILPLLHDLAQQMVQAGNQQQLLRIYRDTRSSVMDESLRKLGVEKLSKEDVQKMQWEVLEAKIGNWIHFMRIAVKVLFVGERRVCDQIFEG FDTLLDQCFAECTASSVSMLLSFGDAIARSKRSPEKLFVLLDMYEIMRELHSEIEAVFGGKACNEIRESTFGLTKRLAQTAQETFGDFEEAVEKDATKTA VLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFESSGETSSQLATITMRIMQALQTNLDGKSKQYRDPALTHLFLMNNIHYMVRSVRRSEAKDLLGDDW VQRHRRVVQQHANQYKRNAWSKILQCLSTQGLTSSSVGGGSAVSGEGGSGSGASRGLIKDRFKTFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLP AYRSFIKRFGPLVESGKNPQKFIRYTAEDLERMLGEFFEGKTLNEPRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	0	1
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	2.00	0.6230
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.001G302000 [exp]	3.74	0.6941
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.012G071600 [exp]	3.74	0.5787	HA2.1
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	10.81	0.6192
AT3G46450			SEC14 cytosolic factor family ...		Potri.009G028700 [exp]	11.61	0.5923
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	16.52	0.5510
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	17.23	0.5644
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Potri.002G170100 [exp]	18.97	0.5281
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.001G285900 [exp]	21.44	0.6188
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	23.74	0.5603

Compare expression of checked genes

Potri.008G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.