Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10620 270 / 2e-92 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 226 / 5e-75 ATNUDX27 nudix hydrolase homolog 27 (.1) AT1G30110 186 / 1e-59 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT4G25434 40 / 0.0006 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 40 / 0.0006 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242100 [exp] 331 / 2e-116 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.006G203700 [exp] 233 / 2e-77 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 227 / 7e-75 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G130100 [exp] 204 / 6e-67 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 201 / 8e-66 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.018G069100 [exp] 42 / 0.0003 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.005G077500 [exp] 40 / 0.001 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018988 [exp] 278 / 3e-95 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10033839 [exp] 266 / 3e-90 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10021279 [exp] 222 / 3e-73 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 216 / 1e-70 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 215 / 2e-70 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 212 / 4e-69 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 203 / 1e-65 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 201 / 1e-64 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10003714 [exp] 197 / 3e-64 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 172 / 6e-49 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.008G017900.1 pacid=42806652 polypeptide=Potri.008G017900.1.p locus=Potri.008G017900 ID=Potri.008G017900.1.v4.1 annot-version=v4.1 ATGGCCATTTGCCGTTCTGTTTTCTTACATTCCCCCCTTCTTCATCATCCTCCTCAGCCTCAGGTTCTGTCTAAACCCACTTTTTTCTCCCCAAACTACC CTCCTAAGTTCTCTAAATTCACCAAGTTGCCACTCCTCCATCAAAACCCGAAACCTCACAACACAACAATATCGAGTCTCGGCTGTACATCATCAGCATC ATCATCAATGGAATCACCTCCTGAAGGTTACCGAAAAAATGTTGGCATTTGCCTTATCAGCCCATCAAAGAAGATTTTTGCTGCTTCAAGGTTGGATATG CCCAATGCTTGGCAAATGCCACAGGGTGGCATTGATGAGAATGAAGACCCGAAAGTTGCGGTTATCAGGGAACTAAAAGAAGAGACAGGGGTTAGCTCAG CAGAAGTTCTTGCCGAGGCGCCTTCTTGGTTGGCATATGACTTCCCACCAGAAGTCAGGGAAAAACTTAAACATCAATGGGGATCTGACTGGAAAGGTCA AGCACAGAAGTGGTTTCTCCTTAAATTCACAGGGAATGAGGAAGAGATCAATCTACTGGGTGATGGCTCAGAAAAACCTGAGTTTGGCAAGTGGTCATGG ATGTCTCCAGAACAAATAATTGACCTTGCTGTGGATTTCAAGAAACCTGTATACGAGGAAGTTTTGGCAGTTTTTGCTCCCTATTTTCAATAA
AA sequence Show only first row Show all	>Potri.008G017900.1 pacid=42806652 polypeptide=Potri.008G017900.1.p locus=Potri.008G017900 ID=Potri.008G017900.1.v4.1 annot-version=v4.1 MAICRSVFLHSPLLHHPPQPQVLSKPTFFSPNYPPKFSKFTKLPLLHQNPKPHNTTISSLGCTSSASSSMESPPEGYRKNVGICLISPSKKIFAASRLDM PNAWQMPQGGIDENEDPKVAVIRELKEETGVSSAEVLAEAPSWLAYDFPPEVREKLKHQWGSDWKGQAQKWFLLKFTGNEEEINLLGDGSEKPEFGKWSW MSPEQIIDLAVDFKKPVYEEVLAVFAPYFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Potri.008G017900 [exp]	0	1
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	5.29	0.9086
AT5G59500			protein C-terminal S-isoprenyl...		Potri.009G033700 [exp]	5.83	0.9309
AT1G10522			unknown protein		Potri.010G094900 [exp]	12.64	0.9218
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Potri.009G064500 [exp]	15.19	0.8859
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Potri.001G028500 [exp]	15.87	0.9142
AT4G31930			Mitochondrial glycoprotein fam...		Potri.018G021600 [exp]	17.05	0.8654
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.013G046200 [exp]	21.81	0.9046
AT1G26740			Ribosomal L32p protein family ...		Potri.008G090100 [exp]	22.97	0.8939
AT5G39600			unknown protein		Potri.004G228566 [exp]	23.10	0.8675
AT4G11120			translation elongation factor ...		Potri.014G172300 [exp]	23.28	0.8225

Compare expression of checked genes

Potri.008G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.