Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06260 534 / 0 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 403 / 4e-141 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G13250 399 / 2e-139 GATL3 galacturonosyltransferase-like 3 (.1) AT3G62660 394 / 6e-137 GATL7 galacturonosyltransferase-like 7 (.1) AT1G70090 392 / 4e-136 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G02720 390 / 7e-136 GATL5 galacturonosyltransferase 5 (.1.2) AT3G28340 389 / 2e-135 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G24170 390 / 5e-135 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 382 / 8e-133 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 375 / 5e-130 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242300 [exp] 588 / 0 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.008G116900 [exp] 434 / 2e-153 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 434 / 3e-153 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.007G031700 [exp] 407 / 2e-142 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.002G200200 [exp] 399 / 4e-139 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.005G128000 [exp] 397 / 1e-138 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 395 / 1e-137 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 392 / 2e-136 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G038300 [exp] 392 / 3e-136 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034012 [exp] 522 / 0 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 518 / 0 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 422 / 4e-148 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 417 / 3e-146 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 402 / 3e-140 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10018801 [exp] 399 / 3e-139 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 398 / 1e-138 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10029215 [exp] 397 / 2e-138 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10016301 [exp] 392 / 1e-136 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10002440 [exp] 384 / 2e-132 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.008G018100.1 pacid=42807900 polypeptide=Potri.008G018100.1.p locus=Potri.008G018100 ID=Potri.008G018100.1.v4.1 annot-version=v4.1 ATGGCCTCCTGTGCCCCGTCCCTCCTCCTTGGCCTCCTGTCTTTCCTCATTGTGGCGAACATAGCATCATCATCATCCTCTTCCGGGGGAATCCGCCTCA GTATTATCCGAAAACCATTCGCTGCTGTCCCTGTCTTCAGGGAGGCTCCAGCTTTTCGAAATGGGGATTCCTGTGGGCTTCAGAGAATCCACATTGTCAT GACTCTTGATGCCAATTACCTTAGAGGCACCATGGCTGCCGTTTTATCCATCCTCCAACATTCTACTTGCCCTGAAAACATGGAGTTCCATTTTCTCTGG TCACGTTTCGAGCGTGAGGTCTTCTCCAGCATCAAATCCACCTTCCCTTACCTTAACTTCAAATTTTACCGGTTTGATTCCAACCGTGTTCGCGGCAAGA TATCTAAATCCATTCGTCAGGCCCTAGACCAGCCTTTAAACTATGCTAGAATTTACCTTGCTGACATTATCCCATCCGACGTTAAACGTGTGATTTATCT GGACTCTGATCTTGTTGTTGTTGATGATATTGCAAAATTATGGGAGGTTGATTTAGAGGAAAAGGTTTTGGCTGCTCCAGAATATTGTCATGCAAATTTC ACCAACTATTTCTCTAACCTATTTTGGCTTGATCCTGTTTTGGCCAAGACTTTTCATGGAAGAAGGCCTTGTTATTTTAACACAGGAGTCATGGTTGTGG ATGTGGAAAAGTGGAGGCAAGGAGGGATTACACAAAAGGTTGAAGAGTGGATGACAGTGCAAAAGCAAAAGAGAATCTATCATTTAGGTTCATTGCCGCC ATTTCTATTGGTCTTGGCTGGGAACATAAAAGGAGTTGACCATCGATGGAACCAGCATGGATTAGGGGGTGACAACATGGAAGGAAAGTGTAGGAGTTTG CACCCAGGACCTATTAGTTTGCTTCATTGGAGTGGGAAAGGGAAACCTTGGCTGAGGCTTGACTCAAGGAAACCTTGCATTGTGGATCATCTCTGGGCTC CATACGATCTTTATCGCTCATCGATGCATGCTCTTGAAGAATGA
AA sequence Show only first row Show all	>Potri.008G018100.1 pacid=42807900 polypeptide=Potri.008G018100.1.p locus=Potri.008G018100 ID=Potri.008G018100.1.v4.1 annot-version=v4.1 MASCAPSLLLGLLSFLIVANIASSSSSSGGIRLSIIRKPFAAVPVFREAPAFRNGDSCGLQRIHIVMTLDANYLRGTMAAVLSILQHSTCPENMEFHFLW SRFEREVFSSIKSTFPYLNFKFYRFDSNRVRGKISKSIRQALDQPLNYARIYLADIIPSDVKRVIYLDSDLVVVDDIAKLWEVDLEEKVLAAPEYCHANF TNYFSNLFWLDPVLAKTFHGRRPCYFNTGVMVVDVEKWRQGGITQKVEEWMTVQKQKRIYHLGSLPPFLLVLAGNIKGVDHRWNQHGLGGDNMEGKCRSL HPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSMHALEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.008G018100 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Potri.003G093500 [exp]	9.89	0.7829
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.006G196500 [exp]	14.35	0.6147	MS2.1
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	20.71	0.7416
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468900 [exp]	21.97	0.7286
					Potri.012G022650 [exp]	22.04	0.7134
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	23.74	0.7451
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	26.26	0.7321
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	30.06	0.7375
AT2G31500		CPK24	calcium-dependent protein kina...		Potri.007G127000 [exp]	30.49	0.6751
AT4G18335			unknown protein		Potri.004G132400 [exp]	39.74	0.7088

Compare expression of checked genes

Potri.008G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.