Plant FIBer expression Database

Potri.008G018200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10630 588 / 0 UDP-Glycosyltransferase superfamily protein (.1)
AT5G59070 42 / 0.0007 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011469
[exp]
47 / 2e-05 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF00534 Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence
>Potri.008G018200.3 pacid=42806639 polypeptide=Potri.008G018200.3.p locus=Potri.008G018200 ID=Potri.008G018200.3.v4.1 annot-version=v4.1
ATGGATACCCATGACAACCAGCCACACCCAGCAACAAGATCAAAACCCTCTAAAATCTACTGTTTATCAATACCGATCCTCTTTTTAGCAATCTCATTAA
GTTTCTTCATCAAGACAAGCCACTACTTCAAAATCCAACACCTAAAATCAACACTCACATCAAACCCCACTTATTTTCAAGAACTCCTAGGGTTTCTTTA
TTCAACCCAAAACCCCACCAAAACCCAACAACCAAATCACATTTCCGTACCCTCTCACTGTGTTTTATGGATGGCACCTTTCCTTTCAGGTGGTGGGTAT
AGCTCAGAATCTTGGTCATATATTTTAGCACTTAATGAAAACATGAACAAGAAAAGGTTTAAGTTGAGTATTGAGCAACACGGTGATCTAGAATCTTTGG
AGTTTTGGGAAGGTTTGCCTCAAGAAACCAAGAACTTGGCTGTTAAGCTTTATCAAACTGAATGCAGAGTAAATGAGACTATTGTGATATGTCATAGTGA
GCCTGGTGCCTGGTACCCACCATTGTTTCAAACCAGGCCTTGTCCACCAACTGGTTATGAAAATTTTAATTTTGTTATTGGTAGAACCATGTTTGAGACT
GATAGAGTGAATGCTGAGCATGTTAAGAGATGTAATAGAATGGATTATGTTTGGGTTCCTACTGATTTTCATGTGTCTACATTTGTGCAAAGTGGGGTTG
ATCCATCTAAGGTTGTTAAAGTGGTTCAGGCTGTTGATGTTGAGTTCTTTGATCCTTTAAAGTATGAGCCTTTAGATCTTGTTTCAATAGGGAATTTGGT
TTTGGGTTCAGGAAAGAAGGATCTGGATTCGAAGATGGAGTTTGTGTTCTTGAGTGTGTTTAAGTGGGAGTATAGGAAAGGGTGGGATGTATTGTTGAAA
GCATACTTGAAAGAGTTTTCTAGGATTGATGGGGTTGCTTTGTACTTGCTAACAAATCCTTACCATTCTGATAGGGATTTTGGGAACAAGATTGTGGAGT
TTGTTGAGGATACTGGCATAGAGGAACCAGTTAAAGGTTGGGCGCTTATTTATGTGATTGATACTCATATAGCTCAGGTTGATTTGCCAAGAATGTATAA
GGCTGCCCATGCATTTGTTCTTCCATCAAGAGGAGAAGGGTGGGGGAGGCCTCTGGTGGAGGCCATGTCAATGTCTTTGCCAGTTATTGCAACGAATTGG
TCTGGACCAACAGAGTATTTGACAGAGGAGAATAGCTATCCATTACTGGTGGATAGAATGAGTAAAGTTATGGAAGGGCCATTTGAAGGGCATCTTTGGG
CTGAACCTTCTATTGATAAGCTACAAGTTTTGATGAGGCATGTAATAACTAATGTTGAGGAAGCAAATATGAGGGGAAGGCGAGCAAGGGAAGACATGAT
TAGAAGGTTTTCTCCTCGGATTGTTTCTGGTGTTGTCACAGATCTAATTGAAAATCTACTTGATCGGATGATTTGA
AA sequence
>Potri.008G018200.3 pacid=42806639 polypeptide=Potri.008G018200.3.p locus=Potri.008G018200 ID=Potri.008G018200.3.v4.1 annot-version=v4.1
MDTHDNQPHPATRSKPSKIYCLSIPILFLAISLSFFIKTSHYFKIQHLKSTLTSNPTYFQELLGFLYSTQNPTKTQQPNHISVPSHCVLWMAPFLSGGGY
SSESWSYILALNENMNKKRFKLSIEQHGDLESLEFWEGLPQETKNLAVKLYQTECRVNETIVICHSEPGAWYPPLFQTRPCPPTGYENFNFVIGRTMFET
DRVNAEHVKRCNRMDYVWVPTDFHVSTFVQSGVDPSKVVKVVQAVDVEFFDPLKYEPLDLVSIGNLVLGSGKKDLDSKMEFVFLSVFKWEYRKGWDVLLK
AYLKEFSRIDGVALYLLTNPYHSDRDFGNKIVEFVEDTGIEEPVKGWALIYVIDTHIAQVDLPRMYKAAHAFVLPSRGEGWGRPLVEAMSMSLPVIATNW
SGPTEYLTEENSYPLLVDRMSKVMEGPFEGHLWAEPSIDKLQVLMRHVITNVEEANMRGRRAREDMIRRFSPRIVSGVVTDLIENLLDRMI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10630 UDP-Glycosyltransferase superf... Potri.008G018200
[exp]
0 1
AT3G53700 MEE40 maternal effect embryo arrest ... Potri.017G033000
[exp]
5.65 0.8700
AT4G14540 CCAAT NF-YB3 "nuclear factor Y, subunit B3"... Potri.014G167800
[exp]
6.00 0.8767
AT4G22860 Cell cycle regulated microtubu... Potri.001G114400
[exp]
6.92 0.8649
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Potri.001G019500
[exp]
8.36 0.8814
AT4G12750 Homeodomain-like transcription... Potri.014G173300
[exp]
9.79 0.8731
AT5G47360 Tetratricopeptide repeat (TPR)... Potri.001G154901
[exp]
10.19 0.8799
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.008G139800
[exp]
12.12 0.8300
AT1G36390 Co-chaperone GrpE family prote... Potri.002G090000
[exp]
12.96 0.8613
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.016G023100
[exp]
13.30 0.8774
AT4G15820 unknown protein Potri.008G222000
[exp]
14.07 0.8673

Potri.008G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.