Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10640 404 / 5e-145 VPS60.1 SNF7 family protein (.1.2) AT5G04850 401 / 7e-144 VPS60.2 SNF7 family protein (.1.2) AT4G29160 63 / 4e-12 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 60 / 9e-11 VPS32, SNF7.2 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242700 [exp] 436 / 1e-157 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2) Potri.018G069900 [exp] 51 / 1e-07 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 49 / 8e-07 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1) Potri.006G154000 [exp] 42 / 9e-05 AT4G29160 224 / 3e-74 SNF7 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008953 [exp] 410 / 4e-147 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2) Lus10028867 [exp] 409 / 6e-143 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10043454 [exp] 377 / 1e-133 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2) Lus10034131 [exp] 374 / 4e-133 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2) Lus10032705 [exp] 52 / 5e-08 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10012921 [exp] 50 / 3e-07 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.008G018300.1 pacid=42807691 polypeptide=Potri.008G018300.1.p locus=Potri.008G018300 ID=Potri.008G018300.1.v4.1 annot-version=v4.1 ATGAAGAGAGTTTTTGGTGTAAAAAAAGATAAAGAACCACCACCTTCAATTCAAGATTCATCAGATAGGATTAATAAGAGAGGTGAAACAGTAGATGAGA AGATCAAGAAGCTTGATGCAGAACTTGCTAGGTATAAAGAACAGATCAAGAATACAAGACCTGGACCTGCTCAAGAGGCTGTTAAATCTAGAGCTATGAG GGTTCTTAAGCAGAAGAGAATGTATGAAGGACAGCGTGACATGCTTTATAATCAGACGTTCAACCTTGATCAAGTTGCATTTGCTTCTGAAGGAATTAAA GATGCTCAACAAACTGTGTCAGCTTTGAAATCCGCCAACAAGGAATTGAAAGGAATGATGAAAACTGTGAAGATTCAAGATATTGATAACTTGCAAGATG AGATGATGGACTTGATGGATGTTAGCAGTGAAATTCAAGAGACCTTGGGTAGAAGCTACAGCGTGCCAGATGATATTGATGAGGAAGATCTCATGGGTGA ACTTGATGCTTTGGAAGCAGACATGGCAATGGAAACTGAATCTGACGGGGTGCCTTCTTATCTGCAACCTGATAAGGAACCTGATTTTGATTCAGAACTG AACTTGCCTTCGGCACCCACAGGACATGCAGCACCAGCTGGTAGAGCCAATAATCAGGCTGAGGATGAACTGGGCTTACCTGCTGTCCCTCGGGCATCTC TTCGTGGTTAG
AA sequence Show only first row Show all	>Potri.008G018300.1 pacid=42807691 polypeptide=Potri.008G018300.1.p locus=Potri.008G018300 ID=Potri.008G018300.1.v4.1 annot-version=v4.1 MKRVFGVKKDKEPPPSIQDSSDRINKRGETVDEKIKKLDAELARYKEQIKNTRPGPAQEAVKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIK DAQQTVSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQETLGRSYSVPDDIDEEDLMGELDALEADMAMETESDGVPSYLQPDKEPDFDSEL NLPSAPTGHAAPAGRANNQAEDELGLPAVPRASLRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	0	1
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	2.44	0.7536	Pt-ACT2.2
AT5G58740			HSP20-like chaperones superfam...		Potri.001G251204 [exp]	3.16	0.7297
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	4.24	0.7458	RAB1.6
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	4.24	0.7444
AT1G01910			P-loop containing nucleoside t...		Potri.014G078100 [exp]	6.92	0.7218
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	7.48	0.7112
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.015G032600 [exp]	10.00	0.6641	ACCAL.6
AT4G26060			Ribosomal protein L18ae family...		Potri.006G146300 [exp]	10.39	0.7074
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	11.66	0.6769
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	11.83	0.6893

Compare expression of checked genes

Potri.008G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.