Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SGJ3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 528 / 0 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 513 / 0 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 154 / 7e-43 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 130 / 2e-34 DNAJ heat shock family protein (.1) AT2G22360 129 / 5e-33 DNAJ heat shock family protein (.1) AT4G39960 121 / 2e-30 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 120 / 8e-30 GFA2 gametophytic factor 2 (.1) AT3G47940 107 / 8e-26 DNAJ heat shock family protein (.1) AT3G17830 107 / 4e-25 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 103 / 1e-24 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243100 [exp] 619 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 578 / 0 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 499 / 2e-176 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 225 / 7e-71 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 154 / 5e-45 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.014G122600 [exp] 157 / 3e-44 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 155 / 2e-43 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 122 / 1e-30 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 119 / 3e-29 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004109 [exp] 500 / 3e-177 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 449 / 2e-156 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 446 / 1e-155 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 286 / 2e-94 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 283 / 3e-93 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 266 / 2e-86 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10022297 [exp] 157 / 6e-44 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 153 / 9e-43 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 150 / 2e-41 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 149 / 4e-41 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G018800.2 pacid=42808242 polypeptide=Potri.008G018800.2.p locus=Potri.008G018800 ID=Potri.008G018800.2.v4.1 annot-version=v4.1 ATGTTTGGGAGAGCACCAAAGAAAAGCGACAACACCAAGTACTATGAGGTTCTTGGAGTCTCAAAGAGTGCTTCACAGGATGATCTAAAGAAGGCTTATA GGAAAGCAGCTATCAAGAACCATCCTGACAAGGGCGGTGATCCTGAAAAGTTCAAGGAGTTGGCACAAGCATATGAGGTTCTGAGTGACCCTGAGAAACG TGAGATATATGATCAGTATGGAGAGGATGCCCTCAAGGAAGGAATGGGCGGCGGCGGCAGCGGCGCCCATGATCCATTTGATATCTTCCAATCCTTCTTT GGTGGTGGTAATCCGTTCGGTGGTGGTGGTAGCAGCAGAGGCCGAAGGCAAAGGAGGGGCGAGGATGTGATCCATCCCCTTAAAGTTTCTTTTGAAGACA TTTATAATGGCACATCCAAGAAGCTTTCTCTTTCACGCAATGTAATCTGCTCCAAGTGCAAGGGTAAAGGTTCTAAGTCCGGAGCATCATCAAAATGTGC TGGTTGCCAAGGTTCTGGAATGAAGGTCTCCATAAGACACCTTGGTCCTTCTATGATTCAGCAAATGCAGCATCCCTGCAATGAATGCAAGGGTACGGGC GAGACAATTAATGATAAGGACCGTTGCCCTCAATGCAAGGGTGAAAAGGTTGCCCAGGAGAAAAAAGTTTTGGAAGTAGTTGTTGAGAAGGGCATGCAAA ATGGGCAGAGGATAACGTTCCCTGGAGAAGCTGACGAGGCACCTGACACTGTTACAGGGGACATCGTCTTCGTCCTCCAGCAAAAGGATCACCCTAAGTT TAAGAGAAAGGGTGATGACCTATTTGTTGAGCACACCCTATCTCTTACCGAGGCACTCTGTGGCTTCCATTTCGTCTTGACCCATTTGGATGGAAGGCAG CTCCTGATAAAATCTCAACCTGGGGAAGTAGTCAAGCCTGATCAATTCAAGGCTATAAATGATGAAGGAATGCCAATGTACCAAAGGCCATTTATGAGAG GGAAACTCTACATTCATTTCAGTGTTGATTTCCCAGATTCCCTGTCTACTGATCAGTGCAAGGCCTTGGAGGCTGTGCTTCCTCCACGAGCCTCTGTTCA GCTGACTGACATGGAGCTTGATGAATGCGAGGAAACTACTTTACATGATGTGAACATCGAGGAGGAGATGAGGAGGAAACAGCAACAACAGGCCCAAGAA GCGTATGATGAAGATGATGAAATGCCTGGTGGTGCCCAGAGGGTGCAATGTGCTCAGCAATAA
AA sequence Show only first row Show all	>Potri.008G018800.2 pacid=42808242 polypeptide=Potri.008G018800.2.p locus=Potri.008G018800 ID=Potri.008G018800.2.v4.1 annot-version=v4.1 MFGRAPKKSDNTKYYEVLGVSKSASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGSGAHDPFDIFQSFF GGGNPFGGGGSSRGRRQRRGEDVIHPLKVSFEDIYNGTSKKLSLSRNVICSKCKGKGSKSGASSKCAGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTG ETINDKDRCPQCKGEKVAQEKKVLEVVVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKDHPKFKRKGDDLFVEHTLSLTEALCGFHFVLTHLDGRQ LLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPDSLSTDQCKALEAVLPPRASVQLTDMELDECEETTLHDVNIEEEMRRKQQQQAQE AYDEDDEMPGGAQRVQCAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.008G018800 [exp]	0	1	Pt-SGJ3.1
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G286700 [exp]	4.24	0.6841
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	28.63	0.6745
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	35.28	0.6592	STI.2
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	37.46	0.5909	Pt-SGJ3.2
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	52.96	0.6329	Pt-XF1.2
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	59.90	0.5573
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Potri.001G360600 [exp]	72.67	0.5449
AT2G35900			unknown protein		Potri.016G066800 [exp]	84.80	0.5941
AT4G14270			unknown protein		Potri.001G023100 [exp]	86.22	0.5761
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.004G100100 [exp]	139.16	0.5285	Pt-LBD41.1

Compare expression of checked genes

Potri.008G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.