Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06490 132 / 5e-39 RING/U-box superfamily protein (.1) AT2G35910 116 / 1e-32 RING/U-box superfamily protein (.1) AT2G46160 95 / 2e-24 RING/U-box superfamily protein (.1) AT3G61550 94 / 4e-24 RING/U-box superfamily protein (.1) AT5G07040 89 / 1e-22 RING/U-box superfamily protein (.1) AT5G53110 90 / 2e-21 RING/U-box superfamily protein (.1) AT2G25409 86 / 2e-21 unknown protein AT2G46495 89 / 4e-21 RING/U-box superfamily protein (.1) AT2G25410 85 / 9e-20 RING/U-box superfamily protein (.1) AT2G34990 84 / 1e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243200 [exp] 285 / 9e-100 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.010G243500 [exp] 207 / 2e-69 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 158 / 1e-49 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 144 / 5e-44 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 133 / 7e-40 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 130 / 4e-39 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 126 / 2e-37 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.002G165200 [exp] 106 / 6e-29 AT3G61550 204 / 5e-67 RING/U-box superfamily protein (.1) Potri.014G091000 [exp] 100 / 1e-26 AT3G61550 176 / 1e-55 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041079 [exp] 102 / 3e-27 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10003400 [exp] 94 / 2e-24 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10024124 [exp] 89 / 2e-22 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10032382 [exp] 92 / 5e-22 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10023086 [exp] 91 / 9e-22 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10036404 [exp] 86 / 1e-21 AT3G61550 149 / 2e-46 RING/U-box superfamily protein (.1) Lus10012628 [exp] 90 / 3e-21 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10019018 [exp] 88 / 8e-21 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10005389 [exp] 84 / 8e-21 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10031515 [exp] 87 / 2e-20 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G019000.2 pacid=42807335 polypeptide=Potri.008G019000.2.p locus=Potri.008G019000 ID=Potri.008G019000.2.v4.1 annot-version=v4.1 ATGAATAGCAGTAGTCCTGTAGAAACTCGTACACAAACTTTTGGTGAGTGTGCCCTCACTTTTGGGATACCAATTGGCGTGTTTTCAGTAATTGCAATTG CTATTCTTGCTTCCTATTTCTGCTCCAGGAAGCCAATACCTGCAGGCCATTCTCTTCATGATGTCTCCTTGTCCATAAATGGTCAAGACTCGGTCATTAT AGAAATAGGTCTGAACGAAGCCACTCTCAATACCTATCCAAAGCTTCTTTATTCTGAAGCAAAGGAAAAGCTTGAAAAGGGTGATGATTTGGCAGCTACT TCATGTTGCTCAATTTGCTTGCAAGACTATAAAGATAGTGACCTGCTACGGCTGTTACCTGAGTGTGGTCATCTTTTCCATGCACAGTGCATTGATCTAT GGTTGAAGTTGCATCCTACCTGTCCAATATGTCGAAACTCGCCTGTCCCAACGCCAATCAATGTCACCGAAACAGCTTCCAGGGCACCCCGGAGAGTGTT GTATGATGCATTTTTTGTACAGTTAATGCACTAG
AA sequence Show only first row Show all	>Potri.008G019000.2 pacid=42807335 polypeptide=Potri.008G019000.2.p locus=Potri.008G019000 ID=Potri.008G019000.2.v4.1 annot-version=v4.1 MNSSSPVETRTQTFGECALTFGIPIGVFSVIAIAILASYFCSRKPIPAGHSLHDVSLSINGQDSVIIEIGLNEATLNTYPKLLYSEAKEKLEKGDDLAAT SCCSICLQDYKDSDLLRLLPECGHLFHAQCIDLWLKLHPTCPICRNSPVPTPINVTETASRAPRRVLYDAFFVQLMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	10.81	0.9049	Pt-CYP704.1
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	12.44	0.9039
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.015G020500 [exp]	12.96	0.8999
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Potri.008G120200 [exp]	14.83	0.8963
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	16.43	0.8995
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.010G160100 [exp]	25.82	0.8926
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	32.61	0.9014
AT5G65250			unknown protein		Potri.005G073500 [exp]	32.72	0.8988
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G025100 [exp]	33.76	0.9040
AT1G55000			peptidoglycan-binding LysM dom...		Potri.005G032100 [exp]	34.40	0.8905

Compare expression of checked genes

Potri.008G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.