Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38710 336 / 7e-119 AMMECR1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240000 [exp] 402 / 6e-145 AT2G38710 346 / 1e-122 AMMECR1 family (.1.2) Potri.008G019325 [exp] 197 / 7e-65 AT2G38710 176 / 1e-56 AMMECR1 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029751 [exp] 372 / 4e-133 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029754 [exp] 372 / 4e-133 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10042783 [exp] 370 / 3e-132 AT2G38710 360 / 2e-128 AMMECR1 family (.1.2) Lus10029750 [exp] 221 / 2e-74 AT2G38710 219 / 2e-73 AMMECR1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01871 [poplar] [flax] AMMECR1 AMMECR1
Representative CDS sequence Show only first row Show all	>Potri.008G019200.1 pacid=42806605 polypeptide=Potri.008G019200.1.p locus=Potri.008G019200 ID=Potri.008G019200.1.v4.1 annot-version=v4.1 ATGGTGGCTGCAAATAGAGAAATGGCTGCATATTGCTTTGATACTCTTGTTGCTCACTACAACTCTGAGGATGCTCCTCCTCCTGCTTTCGACGAGGGCC AACACCCATTGTTCGTCACTTGGAAGAAAGCTGTCAATGGAGGTGAGCCTTGTTTACGTGGATGCATTGGAACTTTGGAAGCTCAATACATAATTACTGG ATTCCGGGACTATGCTTTAACAAGTGCTTTGAGGGACCGCAGATTCCCTCCCATACAAGCTAAAGAATTGCCTACTCTGGAATGCACAGTTTCCATTCTG ACTGATTATGAAACTGCCAACCACTATCTTGATTGGGAGGTTGGGAAGCATGGTTTGGTTATTGAGTTTACTGACCCTAATAACAATGCAAGACGAAGTG CCACTTATTTGCCTGAAGTGGCTGCCCATGAAGGTTGGACGAGAGAGGAGGCAATTGACTCGCTGATGCGCAAAGCAGGCTTCAGTGGCCACATTACAGA CATCCTTCGGAAGTCTATACGAGTGACTCGTTACCAAAGCACATTATTTACCTTGACCTATAGTGATTATGTCTCATATGTCAGGGAAACCAGGGGTGCA GCTCCGTCTATTAATGGGGTGAAGCACGTCAACCATTGA
AA sequence Show only first row Show all	>Potri.008G019200.1 pacid=42806605 polypeptide=Potri.008G019200.1.p locus=Potri.008G019200 ID=Potri.008G019200.1.v4.1 annot-version=v4.1 MVAANREMAAYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKAVNGGEPCLRGCIGTLEAQYIITGFRDYALTSALRDRRFPPIQAKELPTLECTVSIL TDYETANHYLDWEVGKHGLVIEFTDPNNNARRSATYLPEVAAHEGWTREEAIDSLMRKAGFSGHITDILRKSIRVTRYQSTLFTLTYSDYVSYVRETRGA APSINGVKHVNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38710			AMMECR1 family (.1.2)		Potri.008G019200 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	6.92	0.8977
AT3G49100			Signal recognition particle, S...		Potri.005G219400 [exp]	7.07	0.8580
AT3G44330			unknown protein		Potri.004G198200 [exp]	14.76	0.8919
AT1G80230			Rubredoxin-like superfamily pr...		Potri.001G173800 [exp]	15.84	0.7982
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.001G171200 [exp]	22.13	0.8794
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	23.49	0.8775
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Potri.006G218600 [exp]	30.14	0.8720
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Potri.018G087600 [exp]	32.20	0.8621	B5.1
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	33.82	0.8423	PtrcMsrA5
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	34.17	0.8813	COPE2.1

Compare expression of checked genes

Potri.008G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.