Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38710 176 / 8e-57 AMMECR1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019200 [exp] 197 / 3e-65 AT2G38710 336 / 6e-119 AMMECR1 family (.1.2) Potri.010G240000 [exp] 191 / 1e-62 AT2G38710 346 / 1e-122 AMMECR1 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042783 [exp] 191 / 1e-62 AT2G38710 360 / 2e-128 AMMECR1 family (.1.2) Lus10029751 [exp] 185 / 3e-60 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029754 [exp] 185 / 3e-60 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029750 [exp] 130 / 2e-39 AT2G38710 219 / 2e-73 AMMECR1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01871 [poplar] [flax] AMMECR1 AMMECR1
Representative CDS sequence Show only first row Show all	>Potri.008G019325.1 pacid=42808138 polypeptide=Potri.008G019325.1.p locus=Potri.008G019325 ID=Potri.008G019325.1.v4.1 annot-version=v4.1 ATGGATTTGTGTTTCTTGCTGTTGCAGATGAATCGGCTGGAATGGAATGCTGTAAAATTCGAGGAAGATTTGCAGGGAACTGCATGGATCCCGTTGTTCG TCACTTGGAAGAAAGTTGTCAATGGAGGTGAGCCTCGTTTACGTGGATGCATTGGAACTTTGGAAGCTCAGTGCATAATTACTGGATTCCGGGACTATGC TTTAACAAGATTCCCTCCTATACAAGCTAAAGAATATTTGCCTACTCTGGAATGCACTGTTTCCATTCTGACTGATTATGAAACTGCCAACCACTATCTT GATTGGGAGGTTGGGAAGCACGGTTTGATTATTGAGTTTACTGACCCTAATAACAATGCAAGGCGAAGTGCCACTTATTTGCCTGAAGTGGCTGCCCATT GTCAAAGAATCATCTCAACCCAATAA
AA sequence Show only first row Show all	>Potri.008G019325.1 pacid=42808138 polypeptide=Potri.008G019325.1.p locus=Potri.008G019325 ID=Potri.008G019325.1.v4.1 annot-version=v4.1 MDLCFLLLQMNRLEWNAVKFEEDLQGTAWIPLFVTWKKVVNGGEPRLRGCIGTLEAQCIITGFRDYALTRFPPIQAKEYLPTLECTVSILTDYETANHYL DWEVGKHGLIIEFTDPNNNARRSATYLPEVAAHCQRIISTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38710			AMMECR1 family (.1.2)		Potri.008G019325 [exp]	0	1
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	3.46	0.9325
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	6.92	0.8959
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	6.92	0.9053
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136950 [exp]	12.72	0.8928
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	13.63	0.9080
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	17.88	0.8993
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.014G122200 [exp]	18.11	0.9008
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.011G091100 [exp]	20.49	0.8911
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	22.51	0.8848
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	24.81	0.8836

Compare expression of checked genes

Potri.008G019325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.