Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54740 44 / 5e-05 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G239800 [exp] 174 / 6e-55 ND / Potri.013G027100 [exp] 48 / 2e-06 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.005G037600 [exp] 44 / 2e-05 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004863 [exp] 45 / 1e-05 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10020626 [exp] 44 / 3e-05 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10035353 [exp] 42 / 0.0003 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.008G019600.1 pacid=42806630 polypeptide=Potri.008G019551.1.p locus=Potri.008G019600 ID=Potri.008G019600.1.v4.1 annot-version=v4.1 ATGTTTCTTCATTTCATTCCTGTTTTTATCAACTTTCTAGCTTGCCTGTCAGTTTTAGCCATGGAGGGCAATAGTTCCTCTAGTCTCAAGGGCATGTTGA AGTCCCCATCACCCCCAAGACCAATCCTCATGAGGTCTGATCAATCCACACCTGCAACATGGGCTAATTCAGTTTTTTCAAACCCCAAAGAAACCACCAA TGTTGATAATGTTGCCGGTGGATTTGTTGACCTTTCTCTTGAAGAGAGCCCTCTATCCTCCTCCAACTCTTTTGATGCAGCATTACCATATTCGTCTTCT TCACCTTCATGTTGTTTGTTTAATCATTCTGATGTGCAGAGTGAAGCCAGTTCTGATGATCAGAGAGAGGAGATCATGAACGTGGAAACAAAAAAGGACG TGGTTTTTGGGAATCCAACCAAAAAAGAGGGAGTATTTCCTCCTCCAATCTCTTCCTTGGAATTATTTAATAAGGGTATGCCGTATAGTTATCTCAACTA TAATGATTTAAGCGATACCCTTGTTCTCGAGGAGATAAAAATCCCTCCAGGGGACATTCTGCGTGCTAACCGCTCAGGTGGGCGCTTGAGGCTTGCTTTT GTCATTTCAGACGATGAAAGCTCTGACATGGAAGAGGAGGAAGAGATCTCCGGCACCGTTGAATAG
AA sequence Show only first row Show all	>Potri.008G019600.1 pacid=42806630 polypeptide=Potri.008G019551.1.p locus=Potri.008G019600 ID=Potri.008G019600.1.v4.1 annot-version=v4.1 MFLHFIPVFINFLACLSVLAMEGNSSSSLKGMLKSPSPPRPILMRSDQSTPATWANSVFSNPKETTNVDNVAGGFVDLSLEESPLSSSNSFDAALPYSSS SPSCCLFNHSDVQSEASSDDQREEIMNVETKKDVVFGNPTKKEGVFPPPISSLELFNKGMPYSYLNYNDLSDTLVLEEIKIPPGDILRANRSGGRLRLAF VISDDESSDMEEEEEISGTVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54740			Protein of unknown function (D...		Potri.008G019600 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165600 [exp]	6.32	0.8704
AT2G46640			unknown protein		Potri.002G175300 [exp]	8.83	0.8741
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	9.05	0.8881
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	14.42	0.8633
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	18.52	0.8644
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.009G070300 [exp]	18.97	0.8701
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.017G094700 [exp]	20.14	0.8154
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.001G114000 [exp]	22.71	0.8717
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	23.45	0.8506
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	30.39	0.8477

Compare expression of checked genes

Potri.008G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.