Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25100 443 / 3e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G239500 [exp] 97 / 4e-25 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008965 [exp] 470 / 8e-169 AT2G25100 471 / 2e-169 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10028856 [exp] 469 / 2e-168 AT2G25100 468 / 3e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF01351 [poplar] [flax] RNase_HII Ribonuclease HII
Representative CDS sequence Show only first row Show all	>Potri.008G019800.1 pacid=42808431 polypeptide=Potri.008G019800.1.p locus=Potri.008G019800 ID=Potri.008G019800.1.v4.1 annot-version=v4.1 ATGGAATCTGAGTCAATACTCCCCGATTGGGCATCAAAGCCTTGCATTATGGGCATAGATGAAGCTGGTCGCGGACCAGTTCTTGGACCTATGGTGTACG GATGCTTGTACTGTGCTCGCTCTTACGAGAAAACTCTCTCTACCCTCAAATTTGCAGATTCAAAGACTTTAAAAGAAGAGAAAAGGGAGGAGTTATTTGA AAAATTAAAGGCTAACGAATTGATTGGATGGGCTGTTGATGTTATTGATCCGAGGGAGCTCTCGGCTAAAATGCTTAAGAAGATCAAGATAAACCTAAAT GAGATCTCGCACGATTCTGCTAGTGGCCTTGTGACTAGGGTGCTCAACATGGGAGTTCTTTTAACTGATGTGTATGTGGATACAGTGGGAGATCCTGAGA AATATAGAATAAAACTGTCTGAGAGATTTCCTTCTATCAAGTTTGTTGTTGCGAAGAAGGCTGATAGTCTTTATCCAGTCGTGAGCGGAGCAAGTATTGT TGCGAAGGTTACAAGAGACCGGGCCTTGCGAGACTGGGTACTTGATGAAACAGCTGAAAACATGACTAGGAATTTTGGATCTGGATATCCTGGAGATCCT GAAACCAAATCTTGGTTGGAAAAACATCAACACTCGGTATTTGGATTCCCATCATTGGTCCGCTTCAGTTGGGGTACATGCACGTCCTATTCCAAGAACA TGGTTGAAGTTGTGTGGGAATCTGATAAAACGGAGGAAGATGGTTCTAGTAGTAGCAGTGGTAAGAGGCAACTAAAATTAAGCAGTTTTGGTGTCACTAC ATCAAAGAGGAAAAGTGAAGAAATTGAATCAAGTGGTAAAAGCCGCTGCAAGTTTTTCCAGGCTCGTAAACTTGAGCAACTTGCTAATTTCTAG
AA sequence Show only first row Show all	>Potri.008G019800.1 pacid=42808431 polypeptide=Potri.008G019800.1.p locus=Potri.008G019800 ID=Potri.008G019800.1.v4.1 annot-version=v4.1 MESESILPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANELIGWAVDVIDPRELSAKMLKKIKINLN EISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTRNFGSGYPGDP ETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVEVVWESDKTEEDGSSSSSGKRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLANF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	0	1
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	1.41	0.8570
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229350 [exp]	1.73	0.8846
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.015G080100 [exp]	4.89	0.7878
					Potri.017G119700 [exp]	5.47	0.8225
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	6.48	0.8192
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.006G127400 [exp]	6.63	0.8331
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	7.54	0.7661
AT1G28100			unknown protein		Potri.003G163800 [exp]	8.12	0.8206
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015200 [exp]	8.66	0.7749
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143600 [exp]	9.79	0.8377

Compare expression of checked genes

Potri.008G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.