Plant FIBer expression Database

Potri.008G019900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G239400
[exp]
97 / 2e-26 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G019900.1 pacid=42808432 polypeptide=Potri.008G019900.1.p locus=Potri.008G019900 ID=Potri.008G019900.1.v4.1 annot-version=v4.1
ATGGGAGATGGTAACAAGATGGGATATTTGTTCCTCGTGCTCGCAAGCTTATGCTTGTTTGCATCTTCAACTGATCCACTTCATGATCACAAGCCCCTCC
TCTCAGACTCAACAACATCAAAAACAGATCTTCTGCACGAGAACAGTACGGGAGCGACAGGCACACATCAACATGACACCAGTAGCATTGGTGATGATTC
TAGTGAAAGAAGTGGTATAGTACACGGCAGCGAATTTGCCCATGGCTCAGTTTATGGAGGTACACATGGTGGTGCAACTGGGGCAGCTGACACTTCGAAT
GGCGGTGGTGATGAACACGGAAGTGGAGCGGTTGTCGTAACTGGTGCTGTAATGAATCACCACCCAAACAAACACCACAATGCTGGCAGCCACCAGGCGA
ACGGCATAGTGCTTCCAATACTGATTACGACTGCCTTGGTCGCTCTCATTGTACATTAA
AA sequence
>Potri.008G019900.1 pacid=42808432 polypeptide=Potri.008G019900.1.p locus=Potri.008G019900 ID=Potri.008G019900.1.v4.1 annot-version=v4.1
MGDGNKMGYLFLVLASLCLFASSTDPLHDHKPLLSDSTTSKTDLLHENSTGATGTHQHDTSSIGDDSSERSGIVHGSEFAHGSVYGGTHGGATGAADTSN
GGGDEHGSGAVVVTGAVMNHHPNKHHNAGSHQANGIVLPILITTALVALIVH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G019900
[exp]
0 1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.008G187700
[exp]
1.00 0.9074
Potri.003G060432
[exp]
2.00 0.8762
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.012G030125
[exp]
4.24 0.8928
AT2G24130 Leucine-rich receptor-like pro... Potri.006G181200
[exp]
8.48 0.8765
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Potri.018G095000
[exp]
9.16 0.8655
AT3G22060 Receptor-like protein kinase-r... Potri.017G040132
[exp]
9.48 0.8730
AT1G77380 AAP3, ATAAP3 amino acid permease 3 (.1) Potri.002G079500
[exp]
9.48 0.8318 PTRAAP8,AAP3.1
AT2G35790 unknown protein Potri.008G042800
[exp]
10.48 0.8660
AT1G71960 ATABCG25, ABCG2... Arabidopsis thaliana ATP-bindi... Potri.013G111900
[exp]
10.58 0.7916
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Potri.011G125900
[exp]
12.40 0.8617

Potri.008G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.