Plant FIBer expression Database

Potri.008G020200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24830 760 / 0 arginosuccinate synthase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G239000
[exp]
922 / 0 AT4G24830 754 / 0.0 arginosuccinate synthase family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012800
[exp]
791 / 0 AT4G24830 777 / 0.0 arginosuccinate synthase family (.1.2)
Lus10033978
[exp]
775 / 0 AT4G24830 767 / 0.0 arginosuccinate synthase family (.1.2)
Lus10013207
[exp]
720 / 0 AT4G24830 724 / 0.0 arginosuccinate synthase family (.1.2)
Lus10030725
[exp]
204 / 6e-64 AT4G24830 195 / 4e-61 arginosuccinate synthase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00764 Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence
>Potri.008G020200.1 pacid=42807025 polypeptide=Potri.008G020200.1.p locus=Potri.008G020200 ID=Potri.008G020200.1.v4.1 annot-version=v4.1
ATGGCTCAGCTGAAGGCAATATCCCCATGTTCATCACTCAATCTCTCTGTTCATGTCCCTAAGAGCGATTTAATGCTGTGTAATGACAATGTATCTTTTT
CAAAGAAGTCAGCTTTGTTTCAAGAGTTGGGGGCTAGAAACAGTGAGCTTCAGGGTGATGCAGTTGTGAGCAATAAAGGGAATGGTCTTCGAGTTCATTG
CAACAAAGGGATTCAAGCAGTACTATCCCATGACAAAGCTACTGAGGTTTTTGAAGCTACAAAGACTAAAGGGCTAAGAGGAAAATTAAACAAGGTTGTT
TTAGCCTATAGTGGTGGCTTAGACACCTCAGTTATTGTCCCATGGCTACGGGAGAATTACGGTTGTGAAGTTGTTTGCTTCACTGCTGATGTTGGTCAGG
GAGTAGGAGAATTGGAAGGCCTGGAACAAAAGGCCAAGGCTAGTGGTGCTTGTCAGCTAGTGGTGAAGGACTTGCAGGAGGAATTTGTGAGAGACTTTAT
TTTTCCCTGCTTGCGAGCAGGCGCCATCTATGAACGGAAATACTTGCTGGGAACATCAATGGCACGCCCTGTTATTGCAAAGGCCATGGTGGATGTTGCA
AAAGAAGTTGGAGCCGATGCTGTTGCTCATGGATGCACAGGAAAAGGAAATGATCAGGTTCGCTTTGAGCTCACCTTCTTTGCCCTGAATCCTGAGCTCA
ATGTTGTGGCTCCTTGGCGGGAATGGGATATCACAGGAAGAGAAGATGCCATTGAATATGCCAAGAAACACAACGTGCCTGTCCCAGTGACAAAGAAATC
CATATACAGCAGAGACAGAAACTTATGGCACCTGAGCCATGAGGGTGACATTCTGGAAGACCCTGCTAATGAGCCAAAGGAAGATATGTACATGATGTCT
ACTAGTCCAGAAGCTGCACCTGACAAACCTGAATATGTAGAGATTGGGATAGTGTCTGGCCTTCCTGTTTCTGTAAATGGGGTGAAGCTTTCCCCAGCTT
CTCTACTTTCCAAACTCAATGAGATTGGTGGGAAACATGGTATTGGCCGTATTGACATGGTTGAGAACCGACTTGTTGGTATGAAAAGCCGTGGAGTATA
TGAAACTCCTGGAGGCACCATTCTCTTCACTGCTGTACGTGAGCTAGAGTCATTAACCCTGGACCGAGAAACGATGCAAGTTAAAGATTCACTTGCTCTA
AAGTATGCTGAGCTAGTGTATGCAGGCAGGTGGTTTGACCCACTGCGGGAATCAATGGATGCATTTATGGAGAAGATCACAGAGAAGACAAACGGTTCAG
TCAGACTTAAGTTGTACAAAGGATCTGTGTCAGTAGCTAGCCGGACAAGCCCCAATAGCCTCTATAGGGAAGACATATCCTCCTTTGAGAGTGGGCAAAT
ATATGACCAGGCCGATGCAGCTGGATTTATTCGACTCTATGGTCTTCCAATGAGGGTTAGGGCAATGCTTGAGAAGGGCATCTGA
AA sequence
>Potri.008G020200.1 pacid=42807025 polypeptide=Potri.008G020200.1.p locus=Potri.008G020200 ID=Potri.008G020200.1.v4.1 annot-version=v4.1
MAQLKAISPCSSLNLSVHVPKSDLMLCNDNVSFSKKSALFQELGARNSELQGDAVVSNKGNGLRVHCNKGIQAVLSHDKATEVFEATKTKGLRGKLNKVV
LAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGVGELEGLEQKAKASGACQLVVKDLQEEFVRDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVA
KEVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKEDMYMMS
TSPEAAPDKPEYVEIGIVSGLPVSVNGVKLSPASLLSKLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFTAVRELESLTLDRETMQVKDSLAL
KYAELVYAGRWFDPLRESMDAFMEKITEKTNGSVRLKLYKGSVSVASRTSPNSLYREDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEKGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24830 arginosuccinate synthase famil... Potri.008G020200
[exp]
0 1
AT4G34110 PABP2, PAB2, AT... ARABIDOPSIS POLY\(A\) BINDING ... Potri.001G304000
[exp]
4.47 0.8341
AT2G43360 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUX... Potri.017G033300
[exp]
5.29 0.8309 Pt-BIO2.2
AT4G19710 AK-HSDHII, AK-H... aspartate kinase-homoserine de... Potri.013G099500
[exp]
5.91 0.8340 HSDH.2
AT5G20890 TCP-1/cpn60 chaperonin family ... Potri.001G341100
[exp]
6.08 0.8517
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Potri.001G013500
[exp]
17.29 0.8229 Pt-MOD1.1
AT1G57720 Translation elongation factor ... Potri.019G077000
[exp]
23.87 0.8365
AT2G28105 unknown protein Potri.004G215300
[exp]
31.08 0.8312
AT5G24840 tRNA (guanine-N-7) methyltrans... Potri.006G277100
[exp]
43.31 0.7925
AT3G27120 P-loop containing nucleoside t... Potri.001G331200
[exp]
43.58 0.8286
AT1G48580 unknown protein Potri.012G047000
[exp]
45.90 0.8046

Potri.008G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.