Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238700 [exp] 438 / 2e-157 ND / Potri.001G154700 [exp] 44 / 5e-05 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.003G080000 [exp] 41 / 0.0007 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017659 [exp] 345 / 7e-121 ND 37 / 0.006 Lus10033625 [exp] 361 / 2e-120 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10012928 [exp] 50 / 7e-07 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10004376 [exp] 44 / 6e-05 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 44 / 7e-05 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.008G020500.1 pacid=42806069 polypeptide=Potri.008G020500.1.p locus=Potri.008G020500 ID=Potri.008G020500.1.v4.1 annot-version=v4.1 ATGGATGTAGGCTTATCAATCTTGATGGGGTTACAAGCAACAGCGCTGTTCCTCATCTTTGTATCTCTCCAAAATCTTGATTTCACTTTATTATCATTAC CATTCTTGTATGCCTCGTTAGTATCCTTACTTGTATCACTGGCTTCTCATCCATCAATCAATATCCCTACGCTTTTACGCAAAAAACAAGATGGGACTTT TCCTATTTGGTCACTTATAATTTTTAGTCCATACCTATATTTTGTTAGAATCTTTTCATTTCTACGCAGGTTTACTAGTGGGGAGGAGCCTTATAATGAG ATTTGTGAGGGTGTTTATGTTGGTGGGTGGCCTTATTCCGTTGATAAATTGCCACCTGGTAATCCTGCTATTATAGATTGTACTTGTGAGTTTCCTAGAA AAGAGGAGTTCAAAGGGCGTTCTTATTTGTGTCTTCCAACTTGGGATACAAGGGCACCTCAGCCTGGAGAGATTGAATCTACTGTCGAGTGGGCTAGCAG GAAAAGAGCTCAGAATGTGCCTGTTTTCATTCACTGTGCTTATGGTCATGGAAGAAGTGTCGCTGTAATGTGCGCACTGTTGGTGGCTCTAGGCGTGGTG GAAGATTGGAAAAAGGCTGAGCTGTTCATAAGAGAAAGACGACCTTATATTTCAATGAACTCCGTCCAATACAAGGCCTTGGAAGAATGGTCAAAGCACC GGTTATCTACTCCTAGCATAGATGAAGTGAACTCAAGTTCTGCAGTCCCATCAACTTCTTCTGGACGCTCTCGAGCTGATAGGCCAAAAAACAGAAGTGG TTAG
AA sequence Show only first row Show all	>Potri.008G020500.1 pacid=42806069 polypeptide=Potri.008G020500.1.p locus=Potri.008G020500 ID=Potri.008G020500.1.v4.1 annot-version=v4.1 MDVGLSILMGLQATALFLIFVSLQNLDFTLLSLPFLYASLVSLLVSLASHPSINIPTLLRKKQDGTFPIWSLIIFSPYLYFVRIFSFLRRFTSGEEPYNE ICEGVYVGGWPYSVDKLPPGNPAIIDCTCEFPRKEEFKGRSYLCLPTWDTRAPQPGEIESTVEWASRKRAQNVPVFIHCAYGHGRSVAVMCALLVALGVV EDWKKAELFIRERRPYISMNSVQYKALEEWSKHRLSTPSIDEVNSSSAVPSTSSGRSRADRPKNRSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.008G020500 [exp]	0	1
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	4.00	0.8851
AT2G28270			Cysteine/Histidine-rich C1 dom...		Potri.001G229900 [exp]	4.00	0.8258
AT5G21910			unknown protein		Potri.006G220500 [exp]	4.89	0.8784
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	5.83	0.8794
					Potri.006G059400 [exp]	5.91	0.8458
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	11.13	0.7815	Pt-GLX2.1
					Potri.004G226200 [exp]	12.44	0.8481
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	14.00	0.8659
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	16.12	0.8341
AT5G04080			unknown protein		Potri.006G043300 [exp]	16.43	0.8460

Compare expression of checked genes

Potri.008G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.