Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 543 / 2e-172 unknown protein AT2G19390 389 / 5e-115 unknown protein AT4G29790 372 / 6e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238400 [exp] 2049 / 0 AT5G22450 513 / 8e-161 unknown protein Potri.004G203500 [exp] 828 / 0 AT5G22450 958 / 0.0 unknown protein Potri.009G164400 [exp] 786 / 0 AT5G22450 952 / 0.0 unknown protein Potri.006G146600 [exp] 380 / 4e-111 AT2G19390 1068 / 0.0 unknown protein Potri.018G056400 [exp] 335 / 2e-95 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 72 / 5e-14 AT4G29790 203 / 2e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 702 / 0 AT5G22450 916 / 0.0 unknown protein Lus10020607 [exp] 701 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 60 / 2e-09 AT5G22450 71 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G020600.1 pacid=42807104 polypeptide=Potri.008G020600.1.p locus=Potri.008G020600 ID=Potri.008G020600.1.v4.1 annot-version=v4.1 ATGGCTGGAAATGTGAGGTACGATTTGAGTTCTGCTAGTCCAGAGGAATTAGGTTTTACAGGTAGCTTTTCTAATGGGCAGAGGGGGAGTTATCCTAATG CCAGTTTTGATAGGTCTGGAAGCTTCCGGGAGAGCAGTGAGAGCAGAATGTTCAGTTCTGGGGCAAGTACACCCAGGGCTTCTGCTTCACCAGCAAGGAG CATGGGCCCACTTACTCAACATCTGTCATTGGATCCGGTTACTATGGGGGACCCAAAATATACTCGAACAGGCGAGTTAAAGAGGGCTTTTGGGATATCT CTTGGGAGTGCTACAGAAGATAATTCTTTTGGAGCTGCTCATTCAAAGCCACCCCCTGCAGTAGATGTAGAGGAACTGAAGCGGATCAGAGCAGGTGTAT TAGATGACTATCGGAAGTCTAGGAATAGAGCAAAAATGTGGAATGAAAACTTGCTAAGACTTCAAAAATTCCCAGAAGATTTAAATTCAAAGAATCAACA ACGAAGTGAGATGCTAATGAATGAAAGATCTGGTGGTTCAAATTTTTTGAAGATGGGAACGCAGATTCATCGAAACCCTTCAGACCTTGGGACTCAAAGA TTAGAGGACAGGACTAAGACCATTGTTTTGAATAAGCGTGTTCGCTCTTCTGTAGCAGAATCACGGGTTGATGGCCGAAGCAATACAGTTCTGAGGCAGC CTTTGGTGACAGGAAAAGACAGAGATATACACAGGGATGGTGAAGTTTCTAATCTTACTGAAGAAAAGGTCCGTAGGCTACCTGCTGGAGGAGAAGGGTG GGACAAAAAGATGAAAAAGAAACGTTCTGTTGGCACTGTTTTTACCAGGACAATAGACAGTGACGGGGAAGTTAAACGAATGATGAATCATAAGTTTAAT AATGAACACAGTCTGCAGTCTTATGATGCCCAAGGCTTCAGGTCAGGATCTTTTAATGGGAGTAGTGGCATGAACAAGGTAGATGGAATTTCATCATCTG CTAATTCAAATACCCGTGCCATTCCCAAGGAATCGGAAAAAGTTTCTTTGACAAGGGATTATGCTGCTGGCATGAATAAGGAGCGACTTGTAGTGAAAGC AAACAATAAGGTAAATATCACAGAGGACAATAATCACACAGTGAGTCCAAGTCCATTGACAAAAGGAAAGGCTTCCAGGACACCTCGAACAAGCTCATTA ATGGCAGCAAGTACATCTACTAATACTCCCCTCTCACCTGGGGGTTTTGATGGTTGGGAACAACCACCAGCCATAACCAAGGTCAATTCAGTTGGGGGGC CTAATAATCGCAAGCGTCCCATGCCTACAGGGTCATCATCTCCTCCAATGGCTAAATGGGTTGGTCAGAGACCACAAAAAATATCTCGTACCAGAAGGGT GAATGTAGTGTCTCCCGTCTCTAATCATGATGAAGGGCAGATGTCATCAGAAAGAGGACATGTTTCTGATTTTGCCACTCGAGTGACTTCTGGGATTGAT GGGCCTCCTCTTGCCAAGGATGTGCTTAATGGAACCACACAAGTCAGAGTGAAACATGAAAATGTTTCATCTCCATCAAGATTATCTGAAAGTGAAGAAT CTGGTGCTGGTGAAAATCGTGAGGGTAAGCCCAAGGACAAGAGAACAGGTAGTGGTGGGGTAGAGGAGAGATCGCTGAATCAGAATGCTGTTCCTTCTCT ATTGGTTACAAAGAAGAATAAAACACTCGGTAGGGAAGACACTGGTGATGGTGTGCGAAGACAAGGAAGGACTGCTCGGGGTCCATCTTCTAGGACAAAC ATTTCACCAATGAGGGAGAAGTTGGAGAATCCAGCCTCGACCAAACCACTAAGAAATACGAGGCCCATTTCAGACAAGAGCGGAAGCAAGACAGGTCGTC CTCCTCTTAAAAAAATATCAGATCGCAAGGCCTTCACTCGACTTGGGCAAATACCAATAAGCGGTTCCCCAGATTTCTCAGGTGAATCAGATGACGATCG CGAAGAACTCTTAGCTGCTGCAAATTTTGCTTGCAATGCCAGCTATCTTTCCTGTTCTGGTTCTTTTTGGAAGAAAATGGAGCCAGTTTTTGCTCCCATC TGCTCTGGGGATTCATCCTACTTGAAGCAACAGTTGAAGTCTGTGGAGGATCTCCACAAGAGATTATATGAGATGTTTGACTGCAGCAATAATTCGGGTG ATTTTGTGCTTGAAGAAGATATTCCATCCCAACTTATTCATGAAGAAAGTGAGAGAAACTTGCAGGACCAGGATCCACCAAAAAAGTTGGTGAGGACTTC AGATTTGGTAGATCCAAAACAGGACAATAGTGCTGTATGTGGAGGCTCAAGAACAAGAAACAAAGCTACTCCACTGTACCAAAGAGTGTTGTCTGCTCTG ATTGTAGAAGATGGGTCAGAAAAATTTGCAGAAAACAGTGGAGGGAGAAATATTTCTTTTCAATGTACTGGAGATAGTTCTCCAGGTGATGATTGTCTCT CAGTGGATTTTGAGCCCGGGAGCACAAATGGCATTGATTTTAATTATGAATCTATGCTGGGTTTTCAACATCAGAAGCAATCTTCCGTTGATGGTTTTTC TTGTAATGGAAATAGTACTGTTAATAGGATCGGTGGTTTTCACAATAATTCCTATATTGATCATTTGGTGCAAGGAGGTAATGGATTTATGCACTCAAAA ACCGGAATGTTCCCTGGGAGTTTTGAGAATAATGATGAGAAATCAACCATTCATTCAAATGCCATCAGCATGTCTGCATATGATTGCCAATATGAGCAAC TAGGCCTGGAGGACAAACTCTTGATGGAGCTGCAGAGTGTTGGTTTATATCCAGAAACAGTGCCTGATCTAGCAGATGGAGAGGATGAAGCAATTAATGA AGATATTATTGAGCTCCAGAATAAACTTCAACAGGTTGGTAAAAAGGAACACTTGGACAATTTAACTAGAGCTGTTGAGGAGGGAAGGGAGTTGCAAGAA TGGCCCCTTGAGCAGGTTGCAATGGATAGGCTTGTTGAATTGGCTCACAGAAAGCAGTTGGCCACCAGAGGAAATAATGCTTCAAAATTTGGGGTTCCAA AGGTTTCGAAACAAGTTGCCTTGGCTTTTACAAGGAGGACTCTTGCTAAATGTAGAAAATTTGAAGATACAGGCAAGAGTTGTTTTTGTGAGCCCCCCCT TCGAGATGTCATTTTCGCTGCACCTCGTGCAATTGTTGTGGAGTCCACAAGTTGTATTCAGGATCCTGGGGCTTCAGGCTCTTTCACTGGTAGAGCTGAT AGGCATGATCTTCACAACGATAAATTTGGCAGGGGTGTATCATTAGACCATGATTTTGCCAGAACTGGACCATTATTGAACAGAGGGAGGAAGAAGGAAC TACTGCTTGACGATGTTGGTGGTAATGCTTTGTTCAAAACCACATCATCTGTTGGTAATACTCAGCTGGGTGGAGCCAAGGGAAAGAGAAGCGAGAGAGA AAGGGACAAGGATGTATTAGCTAGAAATTCTGTCACCAGAGCTGGTCGTGCTTCTCAGAGCAATATCAAGGGTGACCGTAAAACAAAATCAAAACCCAAG CAGAAGATTGCTCAGCTATCAGCTTCTGGAGATGGAATTATCAACAAGTTCAAAGAAACAGGTAGCAATAAGAAAAGAGAAGTTGGGGCAACATCCAAGG GTTCAAATCCTGTAGATTCATCGAAAAAAAGCAGAGCGACAAACATTGCCGAGTTCCAAGATTTAGACTCTATAGAACTACACGAGGGCAATGATTTCAG TGACACTCAGGATCTGAATAGTTTGTTTGATGGGTTGCCAGAAAACGACTTTGCAGGTGAAATTCTACTTGATGACTTGCCCCTTCAAATTCCTATGGAC GACCTTTCAATGATTCTATAA
AA sequence Show only first row Show all	>Potri.008G020600.1 pacid=42807104 polypeptide=Potri.008G020600.1.p locus=Potri.008G020600 ID=Potri.008G020600.1.v4.1 annot-version=v4.1 MAGNVRYDLSSASPEELGFTGSFSNGQRGSYPNASFDRSGSFRESSESRMFSSGASTPRASASPARSMGPLTQHLSLDPVTMGDPKYTRTGELKRAFGIS LGSATEDNSFGAAHSKPPPAVDVEELKRIRAGVLDDYRKSRNRAKMWNENLLRLQKFPEDLNSKNQQRSEMLMNERSGGSNFLKMGTQIHRNPSDLGTQR LEDRTKTIVLNKRVRSSVAESRVDGRSNTVLRQPLVTGKDRDIHRDGEVSNLTEEKVRRLPAGGEGWDKKMKKKRSVGTVFTRTIDSDGEVKRMMNHKFN NEHSLQSYDAQGFRSGSFNGSSGMNKVDGISSSANSNTRAIPKESEKVSLTRDYAAGMNKERLVVKANNKVNITEDNNHTVSPSPLTKGKASRTPRTSSL MAASTSTNTPLSPGGFDGWEQPPAITKVNSVGGPNNRKRPMPTGSSSPPMAKWVGQRPQKISRTRRVNVVSPVSNHDEGQMSSERGHVSDFATRVTSGID GPPLAKDVLNGTTQVRVKHENVSSPSRLSESEESGAGENREGKPKDKRTGSGGVEERSLNQNAVPSLLVTKKNKTLGREDTGDGVRRQGRTARGPSSRTN ISPMREKLENPASTKPLRNTRPISDKSGSKTGRPPLKKISDRKAFTRLGQIPISGSPDFSGESDDDREELLAAANFACNASYLSCSGSFWKKMEPVFAPI CSGDSSYLKQQLKSVEDLHKRLYEMFDCSNNSGDFVLEEDIPSQLIHEESERNLQDQDPPKKLVRTSDLVDPKQDNSAVCGGSRTRNKATPLYQRVLSAL IVEDGSEKFAENSGGRNISFQCTGDSSPGDDCLSVDFEPGSTNGIDFNYESMLGFQHQKQSSVDGFSCNGNSTVNRIGGFHNNSYIDHLVQGGNGFMHSK TGMFPGSFENNDEKSTIHSNAISMSAYDCQYEQLGLEDKLLMELQSVGLYPETVPDLADGEDEAINEDIIELQNKLQQVGKKEHLDNLTRAVEEGRELQE WPLEQVAMDRLVELAHRKQLATRGNNASKFGVPKVSKQVALAFTRRTLAKCRKFEDTGKSCFCEPPLRDVIFAAPRAIVVESTSCIQDPGASGSFTGRAD RHDLHNDKFGRGVSLDHDFARTGPLLNRGRKKELLLDDVGGNALFKTTSSVGNTQLGGAKGKRSERERDKDVLARNSVTRAGRASQSNIKGDRKTKSKPK QKIAQLSASGDGIINKFKETGSNKKREVGATSKGSNPVDSSKKSRATNIAEFQDLDSIELHEGNDFSDTQDLNSLFDGLPENDFAGEILLDDLPLQIPMD DLSMIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22450			unknown protein		Potri.008G020600 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	1.73	0.8986
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	4.69	0.8874
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	9.00	0.8770
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	11.83	0.8590
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	12.72	0.8078
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	13.26	0.8623
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	13.67	0.8433
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	14.07	0.8303
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	16.79	0.8545
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	16.97	0.8382

Compare expression of checked genes

Potri.008G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.