Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54260 494 / 2e-175 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT5G58600 287 / 1e-93 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 285 / 3e-93 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G29050 284 / 9e-93 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 271 / 1e-87 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 270 / 2e-87 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 270 / 2e-87 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 266 / 2e-85 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G49340 265 / 2e-84 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G01360 262 / 1e-83 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072800 [exp] 316 / 4e-105 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G278300 [exp] 314 / 4e-104 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.019G090000 [exp] 287 / 4e-93 AT3G12060 290 / 3e-92 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) Potri.011G106200 [exp] 284 / 4e-93 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 284 / 7e-93 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.002G195800 [exp] 285 / 9e-91 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.019G090200 [exp] 276 / 7e-90 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.004G055000 [exp] 273 / 1e-88 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.006G071500 [exp] 275 / 1e-87 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014358 [exp] 542 / 0 AT3G54260 466 / 1e-164 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Lus10026066 [exp] 538 / 0 AT3G54260 473 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Lus10033617 [exp] 284 / 7e-93 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10013929 [exp] 277 / 5e-90 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 277 / 8e-90 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000988 [exp] 276 / 1e-89 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10021066 [exp] 280 / 3e-88 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 274 / 7e-88 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10031871 [exp] 271 / 1e-87 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 273 / 6e-87 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G020900.1 pacid=42808354 polypeptide=Potri.008G020900.1.p locus=Potri.008G020900 ID=Potri.008G020900.1.v4.1 annot-version=v4.1 ATGTCAACTTTTTTTATAGCTTCCTCGACTCATAAAGGCTTCCTCGTCACTGGGGAGAGACACTTCACTTCTTGCTCCACTTTGGCTTCAATGGCTAGAC CAAAGCCTGATCAGTTTCTTCTGGCTCTCTTGTTCTTCTTTATCAGTACCTCTCTATGTTTTTGTCATGGCATGCCATGGCAGGTTTTTCAAGAGGATGA TGGCATGTCATGGCTCAATGAGGAGGACAATGAAGTTGACATAGTTCAAACTAGGCATGATCCATCAAGGAGCTGTAACTTTGAATCGGGCAAATGGGTT TATGACCAATCCTATCCTCTCTATGATTCTAACTGCCCCTATCTTAGTACTGCAGTCACTTGTCAAAAAAATGGAAGGCCTGATTCAGACTATGAGAAGT GGCGATGGCAACCTCATGGTTGCTCAATTCCAAGGTTCGATGCACTTAAGTTTCTTGGCAAAATGAGAAGGAAGAGAATAATGTTGGTAGGTGATTCTAT CATGAGGAACCAATGGGAATCTCTTGTCTGCTTAGTACAAGGAGTAATTCCAACTGGGCATAAGAAGGTGACTTATAATGGCCCTTCCATGGCCTTCCAT TCTTTGGATTTTGAGACATCAATAGAGTTTACTTGGGCTCCACTGCTTGTGGAATTGAAGAAAGAGGCTGGAAACAAGAGAATCTTGCATTTGGATTTGA TAGAAGAGAATGCAAGATATTGGAGAAATGTTGATGTTCTGGTGTTTGATTCAGCTCACTGGTGGACTCACTCCGATCAATGGAGCTCGTGGGACTACTA CATGGAGAAACAGACTCTCTTCCAAAGTATGAATCCGATGGTTGCTTATCAGAAAGGACTCACTACATGGGCAAGATGGATAGACTTAAATCTTGATCCT CGAAAAACCAGAGTCATTTTTAGAAGCATATCACCCAGGCATAACCGGGAAAATGGTTGGAAATGCTATAACCAAAGGCAGCCTTTAGCATTTTCCAGTC ACCAGCATGTCCCTGAATCCTTCGTAGTACTGAAAGAGGTGTTGAGAAAAATGAGTTTCCCTGTGTATTTGCAAGATATCACAGCTATGTCAGCTCTACG TAGAGACGGGCACCCTTCTGTCTATAGAAGGGCAATAAGCCAACAAGCGAGACAACACCCCAGCGGCTTTTCTTCTGACTGTAGCCATTGGTGCCTTCCT GGGGTACCTGATATCTGGAATGAGATGTTAAGTGCACTGCTGTAA
AA sequence Show only first row Show all	>Potri.008G020900.1 pacid=42808354 polypeptide=Potri.008G020900.1.p locus=Potri.008G020900 ID=Potri.008G020900.1.v4.1 annot-version=v4.1 MSTFFIASSTHKGFLVTGERHFTSCSTLASMARPKPDQFLLALLFFFISTSLCFCHGMPWQVFQEDDGMSWLNEEDNEVDIVQTRHDPSRSCNFESGKWV YDQSYPLYDSNCPYLSTAVTCQKNGRPDSDYEKWRWQPHGCSIPRFDALKFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGHKKVTYNGPSMAFH SLDFETSIEFTWAPLLVELKKEAGNKRILHLDLIEENARYWRNVDVLVFDSAHWWTHSDQWSSWDYYMEKQTLFQSMNPMVAYQKGLTTWARWIDLNLDP RKTRVIFRSISPRHNRENGWKCYNQRQPLAFSSHQHVPESFVVLKEVLRKMSFPVYLQDITAMSALRRDGHPSVYRRAISQQARQHPSGFSSDCSHWCLP GVPDIWNEMLSALL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	0	1
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	2.44	0.9481
AT1G69080			Adenine nucleotide alpha hydro...		Potri.008G109000 [exp]	3.16	0.9193
AT3G06840			unknown protein		Potri.001G162100 [exp]	3.46	0.9273
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	3.74	0.9300
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	4.24	0.9125
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	5.19	0.9064	Pt-EXPA6.2
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	7.93	0.9082
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.009G031800 [exp]	8.00	0.8770	Pt-EXPA6.1,PtrEXPA5
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	8.24	0.9211	SKU5.2
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	9.48	0.8525

Compare expression of checked genes

Potri.008G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.