Plant FIBer expression Database

MVD1.1 (Potri.008G021100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol MVD1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54250 684 / 0 GHMP kinase family protein (.1)
AT2G38700 667 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G237900
[exp]
800 / 0 AT3G54250 688 / 0.0 GHMP kinase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043438
[exp]
729 / 0 AT3G54250 681 / 0.0 GHMP kinase family protein (.1)
Lus10034147
[exp]
723 / 0 AT3G54250 674 / 0.0 GHMP kinase family protein (.1)
Lus10008966
[exp]
717 / 0 AT3G54250 668 / 0.0 GHMP kinase family protein (.1)
Lus10028855
[exp]
663 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence
>Potri.008G021100.2 pacid=42807558 polypeptide=Potri.008G021100.2.p locus=Potri.008G021100 ID=Potri.008G021100.2.v4.1 annot-version=v4.1
ATGGCAGAGAAAACATGGGTGAGGATGGTGACTGCACAGACACCAACGAATATAGCTGTGATAAAGTACTGGGGCAAGCGAGATGAGACCTTGATTTTGC
CTGTTAATGATAGCATAAGTGTCACTCTTGATCCGGCTCATCTTTGCACCACCACAACTGTTGCTGTGAGTCCTAGTTTTGACCAGGATCGGATGTGGCT
CAATGGAAAGGAGATTTCCCTTTCTGGAGGCAGGTACCAAAATTGTTTAAGGGAAATTCGTGCCCGAGCTTGTGCAGTTGAGGATAAGGAGAAGGGTATC
AAGATTGCAAAGAAGGATTGGGAGAAACTGCACTTGCATGTTGCTTCATATAACAATTTCCCTACTGCCGCTGGACTGGCTTCCTCTGCAGCTGGCTTTG
CTTGTCTTGTTTTTGCCCTTGCAAAGCTGATGAATGCAAAAGAAGATAATAGTGAGCTTTCTGCTATTGCAAGGCAAGGTTCTGGCAGTGCCTGCCGCAG
TTTATTTGGAGGATTTGTGAAGTGGATCATGGGAAAAGCTGAGGATGGAAGTGATAGTCTAGCTGTTCAACTTGTAGATGAAAAGCACTGGGATGAACTT
GTTATTATTATTGCTGTGGTAAGTTCGCGACAGAAAGAAACAAGTAGCACCACAGGAATGCGGGATAGTGTTGAAACTAGCTTGCTTTTGCAACACAGGG
CTAAGGAAGTTGTGCCAAAACGCATTAAACAAATGGAAGAAGCCATAAAGAATCGTGATTTTGGATCTTTTGCACAATTAAGCTGTGCAGATAGCAATCA
GTTCCATGCAGTCTGTTTGGATACATGCCCCCCAATATTCTACATGAACGATACATCTCACAGGATAATCAGCTGTGTCGAAAAATGGAATTGCTCAGAA
GGAACGCCTCAGGTGGCTTATACCTTTGATGCTGGGCCAAATGCAGTTCTAATTGCACATAATAGAAAGGCTGCTACCCAGTTAATGCAGAAACTGCTTT
TCTGCTTCCCTCCAAGTTCCGATGCTGATTTGAACAGTTATGTTATAGGTGACAAGTCTATACTAAAAGATGCTGGGATTGAAGATATTAAGGATGTGGA
AGCTTTGCCACCACCTCCAGAAATTAAGGATGCCCAGAGATGCAAAGGAGATGTTAGTTATTTCATTTGTACGAAACCTGGTAGAGGTCCTGCTTTGCTC
TCCGATGAAAGCCAGGCCCTTCTCCATCCCGAAACTGGGCTGCCTAAATGA
AA sequence
>Potri.008G021100.2 pacid=42807558 polypeptide=Potri.008G021100.2.p locus=Potri.008G021100 ID=Potri.008G021100.2.v4.1 annot-version=v4.1
MAEKTWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPSFDQDRMWLNGKEISLSGGRYQNCLREIRARACAVEDKEKGI
KIAKKDWEKLHLHVASYNNFPTAAGLASSAAGFACLVFALAKLMNAKEDNSELSAIARQGSGSACRSLFGGFVKWIMGKAEDGSDSLAVQLVDEKHWDEL
VIIIAVVSSRQKETSSTTGMRDSVETSLLLQHRAKEVVPKRIKQMEEAIKNRDFGSFAQLSCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNCSE
GTPQVAYTFDAGPNAVLIAHNRKAATQLMQKLLFCFPPSSDADLNSYVIGDKSILKDAGIEDIKDVEALPPPPEIKDAQRCKGDVSYFICTKPGRGPALL
SDESQALLHPETGLPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54250 GHMP kinase family protein (.1... Potri.008G021100
[exp]
0 1 MVD1.1
AT1G10030 ERG28 homolog of yeast ergosterol28 ... Potri.002G112700
[exp]
11.57 0.7750
AT5G47770 FPS1 farnesyl diphosphate synthase ... Potri.006G003400
[exp]
15.29 0.7468 Pt-FPS1.2
AT5G59613 unknown protein Potri.008G053000
[exp]
24.37 0.7723
AT5G12440 C3HZnF CCCH-type zinc fingerfamily pr... Potri.001G276300
[exp]
32.24 0.6743
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.008G185500
[exp]
32.61 0.7452
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400
[exp]
38.60 0.6633
AT3G52360 unknown protein Potri.006G200000
[exp]
38.72 0.6931
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Potri.002G263200
[exp]
55.23 0.6715
AT1G17745 PGDH D-3-phosphoglycerate dehydroge... Potri.008G009500
[exp]
55.81 0.7118
AT4G09810 Nucleotide-sugar transporter f... Potri.002G064700
[exp]
64.06 0.7274

Potri.008G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.