Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 433 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 417 / 8e-146 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 409 / 2e-143 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 394 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 394 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 387 / 4e-134 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 345 / 2e-118 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 301 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 285 / 1e-94 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 265 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021000 [exp] 659 / 0 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 578 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 548 / 0 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 536 / 0 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 383 / 4e-133 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 367 / 1e-126 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 325 / 2e-110 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 138 / 2e-36 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021301 [exp] 127 / 3e-36 AT1G74300 65 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041666 [exp] 475 / 1e-167 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 463 / 2e-164 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 459 / 5e-163 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 459 / 9e-163 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 456 / 7e-162 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 451 / 9e-160 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 444 / 4e-157 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 437 / 8e-154 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 426 / 2e-149 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 417 / 2e-146 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G021200.2 pacid=42806830 polypeptide=Potri.008G021200.2.p locus=Potri.008G021200 ID=Potri.008G021200.2.v4.1 annot-version=v4.1 ATGATCAAGGAGATTACAGTGGTCTTGTGTCTGGGGTTCGCTGTATGGGCATATCAGGCCGCCCACCCTCCACCTCCGAAGCTCTGTGGTGCCCCAGGTG GTCCTCCCGTTACAGCACCTAGAATAAAGCTGAGAGATGGGAGGCATCTATCCTACAAGGAGAATGGTTTTCCTAGAGAAAAGGCCAAAGCTAAGATCAT ACTTGTTCATGGCTTTGCCTGTACGAAACATGACATAATGAGTCTGACAGACCTTGTTCCGCATGTTGTTGAGGAGCTTGGGTTGTACTTTGTGTCCTTT GACCGGCCGGGTTATGGAGAAAGTGATCCAGATCCAAAGCGAACTCCGAAAAGTATAGCTTTAGATATAGAGGAGCTTGCTGATCACTTAGAACTAGGAT CCAAGTTTTATGTGATGGGGTTCTCCATGGGAGGCCAAGTGGTTTGGGGCTGCCTCAAGTACATACCTCATAGGCTCGCAGGAGCAACACTAATTGCTCC TGTTGTCAACTATTGGTGGCCTGGCTTTCCTGCCAACTTATCGACAGAAGCCTACTACCGGCAGATACCACAGGAACAATGGATGTTAAGCGTTGCTCAC CATGCTCCGTGGCTCACCTACTGGTGGAACACTCAGAAATTGTTTCCTGCATCGGCTGTTATCGCCAGGAAGCCTGAGATTTTCTCCCGCCAGGATTTAG AACTCGCCTCTATGGCTGCAGAGAAAAGCGAGGACAGGCCACCAGCAACGCCGCAAGGAGAATTTGAGTCCTTACATCGAGACTATAATGTTGGATTCGG GAAGTGGGAATTTGATCCCATGGAGCTTGAAAATCCTTTTCCTAACAATGAAGGCTCAATTCATCTATGGCAGGGTGATGAAGATGCAGTGGTGCCAGTT AGCTTGCAGCGATATATAGCCCAAGGAATTCCATGGATTAACTACCATGAATTGCCTGGTGCTGGACATCTATCCCTCGTTATCCCACAGAACTTCGAAC AAATTGTAAAGGCTCCTTTTCCGGGAAAGGAGTAA
AA sequence Show only first row Show all	>Potri.008G021200.2 pacid=42806830 polypeptide=Potri.008G021200.2.p locus=Potri.008G021200 ID=Potri.008G021200.2.v4.1 annot-version=v4.1 MIKEITVVLCLGFAVWAYQAAHPPPPKLCGAPGGPPVTAPRIKLRDGRHLSYKENGFPREKAKAKIILVHGFACTKHDIMSLTDLVPHVVEELGLYFVSF DRPGYGESDPDPKRTPKSIALDIEELADHLELGSKFYVMGFSMGGQVVWGCLKYIPHRLAGATLIAPVVNYWWPGFPANLSTEAYYRQIPQEQWMLSVAH HAPWLTYWWNTQKLFPASAVIARKPEIFSRQDLELASMAAEKSEDRPPATPQGEFESLHRDYNVGFGKWEFDPMELENPFPNNEGSIHLWQGDEDAVVPV SLQRYIAQGIPWINYHELPGAGHLSLVIPQNFEQIVKAPFPGKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021200 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	2.00	0.8848
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207093 [exp]	2.00	0.8926
					Potri.005G146450 [exp]	2.64	0.8675
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	5.47	0.8834
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	7.61	0.8931	FOMT1,OOMT2.17
					Potri.006G256900 [exp]	18.46	0.8562
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G078600 [exp]	18.49	0.8652
AT5G62200			Embryo-specific protein 3, (AT...		Potri.012G130900 [exp]	19.79	0.8243
AT4G39230			NmrA-like negative transcripti...		Potri.007G036500 [exp]	20.78	0.8560	PCBER5
AT4G12430		TPPF	trehalose-6-phosphate phosphat...		Potri.003G112400 [exp]	21.16	0.8361

Compare expression of checked genes

Potri.008G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.