Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 432 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 428 / 9e-151 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 403 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 399 / 3e-139 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 392 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 365 / 5e-126 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 299 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 287 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 617 / 0 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 547 / 0 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 545 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 539 / 0 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 397 / 9e-139 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 389 / 2e-135 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 338 / 1e-115 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 145 / 6e-39 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 137 / 5e-36 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041666 [exp] 480 / 2e-169 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 471 / 1e-167 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 470 / 2e-167 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 460 / 3e-163 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 459 / 3e-162 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 458 / 3e-162 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 454 / 2e-160 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 453 / 2e-160 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 451 / 2e-159 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 446 / 7e-158 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G021400.3 pacid=42806140 polypeptide=Potri.008G021400.3.p locus=Potri.008G021400 ID=Potri.008G021400.3.v4.1 annot-version=v4.1 ATGCTGAAGGAAATTACGGCGGCATTGTTTTCTGGGTTGGCGATATGGGCATATCAGGCAACCAACCCTCCACCTCCGAAGATTTGTGGTACCCCAGGTG GCCCTCCTATTACAGCTCCAAGAGTAAAACTGAGGGATGGGAGGCATTTGGCCTACAAGGAGCAAGGACTCTCTAGAGAAACAGCCAAATATAAGATCGT ATATGTCCATGGCTTTGCCTCTACGAGACATGATACAATGAGCGTGGCAAACCTCTCTCCGGAAGTTGTTCAGGAGCTGGGATTGTACTTTGTGTCCTTT GACCGGCCGGGTTATGGAGAAAGTGATCCAGATCCAAAGAGGTCTCCGGAGAGTATAGCTTTAGATATAGAAGAGCTTGCTGATCATTTAGAACTAGGAT CCAAGTTTCATGTGATGGGGTTCTCCATGGGAGGTCAAGTGGTTTGGGGCTGCCTCAAGTACATCCCTCACAGGCTAGCAGGAGCAACCCTAATTGCTCC TGTTGTCAACTACTGGTGGCCTGGTTTTCCTGCCAACTTATCAACAGAAGCCTACTACCAACAGCCACCTCAAGACCAATGGACATTACGTGTTGCTCAT CATGCTCCATGGCTCACCTATTGGTGGAACACTCAGAAATGGTTTCCTGCATCGGCTGTTGCAGCCCAAAAACCTGAAGTTTTCTCCCGCCAGGATTTGG AACTGCTTTTCATGGCTACAGGCGGAGGAAAGGACAACAAGCAACAAGCAATGCATCCACAAACAATTCAGCAAGGAGAATTTGAAACCTTACATCGAGA CATGATGGTTGGATTTGGGAAGTGGAAATTCGATCCCATGGATCTTGAAAATCCGTTTCCTGAAAATGAAGGCTCTGTTCATCTATGGCAGGGTGATGAA GATAAAATGGTGCCTCCAAGCTTGCAACGATATATTGTCCAAAGACTTCCATGGATAAACTTCCATGAGGTATCTGGTTCTGGACACCTGTTCCCCTTCA TCCCAGAGATATGCGAAGCGATTATAAAGTCTTCAGTGCTGGGAAAAAACTAG
AA sequence Show only first row Show all	>Potri.008G021400.3 pacid=42806140 polypeptide=Potri.008G021400.3.p locus=Potri.008G021400 ID=Potri.008G021400.3.v4.1 annot-version=v4.1 MLKEITAALFSGLAIWAYQATNPPPPKICGTPGGPPITAPRVKLRDGRHLAYKEQGLSRETAKYKIVYVHGFASTRHDTMSVANLSPEVVQELGLYFVSF DRPGYGESDPDPKRSPESIALDIEELADHLELGSKFHVMGFSMGGQVVWGCLKYIPHRLAGATLIAPVVNYWWPGFPANLSTEAYYQQPPQDQWTLRVAH HAPWLTYWWNTQKWFPASAVAAQKPEVFSRQDLELLFMATGGGKDNKQQAMHPQTIQQGEFETLHRDMMVGFGKWKFDPMDLENPFPENEGSVHLWQGDE DKMVPPSLQRYIVQRLPWINFHEVSGSGHLFPFIPEICEAIIKSSVLGKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	0	1
AT5G10170		ATMIPS3	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.005G078700 [exp]	1.00	0.9008	MIPS.1
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Potri.015G058800 [exp]	8.66	0.8370
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	9.64	0.8856
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141700 [exp]	10.48	0.8503
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	10.77	0.8327
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	12.00	0.8515
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133500 [exp]	12.24	0.8155
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.018G093900 [exp]	15.16	0.7872
AT3G07270			GTP cyclohydrolase I (.1.2)		Potri.002G247100 [exp]	21.90	0.8092
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.015G060400 [exp]	22.91	0.8053

Compare expression of checked genes

Potri.008G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.