Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56160 433 / 3e-150 Sodium Bile acid symporter family (.1) AT1G78560 44 / 0.0002 Sodium Bile acid symporter family (.1) AT2G26900 44 / 0.0002 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103200 [exp] 46 / 4e-05 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 45 / 6e-05 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043443 [exp] 363 / 1e-121 AT3G56160 313 / 5e-102 Sodium Bile acid symporter family (.1) Lus10019540 [exp] 338 / 6e-113 AT3G56160 325 / 8e-108 Sodium Bile acid symporter family (.1) Lus10043384 [exp] 161 / 2e-45 AT3G56160 148 / 1e-40 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 57 / 2e-08 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10005565 [exp] 55 / 5e-08 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10007016 [exp] 43 / 0.0003 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10006672 [exp] 42 / 0.0006 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF01758 [poplar] [flax] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Potri.008G021600.1 pacid=42807690 polypeptide=Potri.008G021600.1.p locus=Potri.008G021600 ID=Potri.008G021600.1.v4.1 annot-version=v4.1 ATGGCGGGAAGGATCCAAACCATGATTCTCACTCCTCGACCCACCCAAACACCGTCGTTCCGCCACAGGCAGCTAAATTTCCCGGCAACTCGCACCACCG CGTACTGTACTCGCTCCGTTTTATTTAATCGTAGCCGCTCGATCTCATCTCCAGTCAGAATCAGAGCTAATCAACGGCCCGATCAGATAGATGACAATGG GAGTGGAGGTGCAAAAACTCTAGGAAAATCACTACTGAATTTTGCAGATAATAATTTTCTTCCACTAGCACTTATTGGTGGAGTAGTGTCAGGGCTTGCA AATCCTACTCTTGGTTGCTTAGCTGATAAATATTATCTGTCGAAATTCAGCACGTTTGCGATATTTATAACATCTGGTTTAACGTTGAGAAATGGGGAGA TCGGTGATGCTATAGAAGCGTGGCCTGTTGGAGTTCTTGGGATTTGCTCCATTTTGTTATTTACACCATTCTTGTCGAAGATAATTTTGCAAATTCAACT CCAACCTCAGGAGTTTGTAACAGGTTTGGCTATATTTTGCTGTATGCCAACTACATTATCAAGTGGGGTGGCTCTAACCCAGCTTGCTGGAGGGAATTCT GCACTTGCTCTTGTGATGACAGTGGTGTCGAATCTGCTAGGAATTTTGATTGTTCCATTTTCTATCTCCAGATTCATTGCTGCTGGAATTGGTGTATCTG TGCCAACCAAGGAATTGTTTAGAAGTATGGTTATCACACTTTTAATCCCTCTTATTTTGGGGAAGATTTTTCGAGAATCCTTCAAAGGTTTGGCAGACTA TGTTGATCGAAATCGTAAGCTCTTCTCGAAGATGAATGCAGTTTTCCTTAGTTTAGCTCCATTTATACAAGTGAGCAGGTCAAGGTCTATGCTGCTAATG GTCAAGCCTTCTGTTTTTCTTGTTGCTGTTGGGATGGGAGTACTTTTGCATCTCATCCTCTTATCTTTTAATGTTCTCGCGATACAAGGCTTCTCAACAG TCTCTGGTAGCAACCAGTTAGCCTCTGCCAAGAAAAAAAATGCAACTGCTTACGTGCTTGTTGCAAGCCAGAAAACTCTTCCTGTTATGGTAGCGGTGGT GGAACAGCTGGGTGGTGCATTTGGTGAATCTGGTTTGCTGGTTCTTCCTTGCGTTGCTGCACATTTAAATCAGATCATCATGGACTCTTTTCTTGTTAAT TTCTGGCTTCGGAAGGATCTCGCATCAAAAAGTGCCAAGGTAGCCTGA
AA sequence Show only first row Show all	>Potri.008G021600.1 pacid=42807690 polypeptide=Potri.008G021600.1.p locus=Potri.008G021600 ID=Potri.008G021600.1.v4.1 annot-version=v4.1 MAGRIQTMILTPRPTQTPSFRHRQLNFPATRTTAYCTRSVLFNRSRSISSPVRIRANQRPDQIDDNGSGGAKTLGKSLLNFADNNFLPLALIGGVVSGLA NPTLGCLADKYYLSKFSTFAIFITSGLTLRNGEIGDAIEAWPVGVLGICSILLFTPFLSKIILQIQLQPQEFVTGLAIFCCMPTTLSSGVALTQLAGGNS ALALVMTVVSNLLGILIVPFSISRFIAAGIGVSVPTKELFRSMVITLLIPLILGKIFRESFKGLADYVDRNRKLFSKMNAVFLSLAPFIQVSRSRSMLLM VKPSVFLVAVGMGVLLHLILLSFNVLAIQGFSTVSGSNQLASAKKKNATAYVLVASQKTLPVMVAVVEQLGGAFGESGLLVLPCVAAHLNQIIMDSFLVN FWLRKDLASKSAKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56160			Sodium Bile acid symporter fam...		Potri.008G021600 [exp]	0	1
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.009G096300 [exp]	6.48	0.8328
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139700 [exp]	21.90	0.7751
AT2G41190			Transmembrane amino acid trans...		Potri.006G038700 [exp]	23.83	0.8147
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	25.92	0.7519
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.002G255600 [exp]	29.39	0.8032
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.014G111600 [exp]	37.97	0.8050
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	55.81	0.7514	WNK8.2
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	74.83	0.7356
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	76.01	0.7213
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.001G002700 [exp]	80.62	0.7155

Compare expression of checked genes

Potri.008G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.