Plant FIBer expression Database

Potri.008G021700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04710 785 / 0 Zn-dependent exopeptidases superfamily protein (.1)
AT5G60160 582 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G095200
[exp]
575 / 0 AT5G60160 810 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.015G092700
[exp]
573 / 0 AT5G60160 818 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.010G237667
[exp]
72 / 2e-15 AT5G04710 54 / 7e-10 Zn-dependent exopeptidases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034142
[exp]
764 / 0 AT5G04710 796 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10022460
[exp]
561 / 0 AT5G60160 800 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10016765
[exp]
552 / 0 AT5G60160 774 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF02127 Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18)
Representative CDS sequence
>Potri.008G021700.1 pacid=42807707 polypeptide=Potri.008G021700.1.p locus=Potri.008G021700 ID=Potri.008G021700.1.v4.1 annot-version=v4.1
ATGGCAGCTGCGTCGATAACTCGCTTGCAAATTCTATCATCTTCACCATCACCGATAAAAATAATCAAACGGTCCTCCGCATTTCTCTCAAAAATTCCGC
CAATTCATAACCACTACCACCATCGCTCTCGCAAATTCCACACCACTCTCTGCTGCTCCACTTCCAATCCAAGTCGAACACTAGAGAATGGATCGATTGT
TGGAGATTTACTGGATTATCTCAATGAATCATGGACTCAGTTTCACGCTACAGCGGAAGCGAAGAGGCAATTGATTGATGCTGGATTTGACTTGCTAAAT
GAGAATGAAGAGTGGGAATTAAAGCCTGGCGGACGATATTTTTTCACAAGGAACATGTCTTGTTTGGTTGCTTTTGCTATTGGTGAGAAGTATAGTGTTG
GAAATGGGTTTCATGTAATAGCTGCACATACAGATAGTCCGTGCTTGAAACTCAAACCGAGATCTGCGTCGTCCAAATCTAGTTATCTAATGGTTAATGT
GCAGACTTATGGAGGTGGTTTATGGCATACTTGGTTTGATAGGGATTTGAGTGTTGCAGGAAGGGTCATTGTGAGAGGTAGTGATGGTTCATTTCTGCAC
AAGCTTGTTAAAATAAAAAGACCTTTGTTAAGAATACCAACACTTGCCATTCATCTTGATCGCACAGTAAATAAGGATGGTTTTAAACCAAACTTAGAGA
CTCACCTTATTCCACTACTTGCAACAAAATCTGAAGAAGGTTCTTCAGAGACAAAAGAGAAAAATACTGAATCTTCAAAAGCTGTTCATCATCCGCTGCT
TATGCAGGTTTTATCAGATGAGCTGAGTTGCAGCATTGACGACATAGTGAGTATAGAGTTGAATGTTTGTGATACTCAACCCAGCTGCCTTGGAGGTGGA
AACAATGAGTTCATTTTTTCTGGAAGGCTAGACAACCTTGCTTCAAGTTATTGTGCATTAAGAGCTCTTATTGATTCATGTGAATCATCCAGTGATTTAT
CAAATGACACTGCAGTCCGGATGATTGCTTTATTTGATAATGAAGAGGTGGGTTCAGGTTCAGTTCAGGGAGCTGGTGCACCGACCATGTTTCAGGCTAT
GAAACGAATTGCTGGGTGCTTGGCTCTTAATAATGTTAATGAAGGGGCTATTGAGCGTGCTATTCGGCAGTCGTTTCTTGTATCTGCTGACATGGCTCAT
GGAGTACACCCAAATTTTATGGAAAAGCATGAAGAACACCATCGGCCTGAAATGCAAAAGGGACTTGTTATCAAGCACAACGCAAATCAGCGGTATGCTA
CCAGTGGAGTCACGGCATTTCTTTTTAAAGAAGTTGGCAAAATCCACAACCTTCCATCTCAGGAATTTGTGGTGAGAAATGATATGGGATGTGGATCCAC
CATTGGTCCTATACTTGCTTCAGGTGCCGGCATCCGCACAGTTGATTGTGGAATTCCTCAACTTTCAATGCACAGTGTGAGAGAGATATGTGCAAAAGAA
GATGTAGACATTGCTTACAAGTATTTCAAAGCATTCTATCAGAACTTTTCAAGCATAGACAAGAAGCTGGAAGTGGATTAA
AA sequence
>Potri.008G021700.1 pacid=42807707 polypeptide=Potri.008G021700.1.p locus=Potri.008G021700 ID=Potri.008G021700.1.v4.1 annot-version=v4.1
MAAASITRLQILSSSPSPIKIIKRSSAFLSKIPPIHNHYHHRSRKFHTTLCCSTSNPSRTLENGSIVGDLLDYLNESWTQFHATAEAKRQLIDAGFDLLN
ENEEWELKPGGRYFFTRNMSCLVAFAIGEKYSVGNGFHVIAAHTDSPCLKLKPRSASSKSSYLMVNVQTYGGGLWHTWFDRDLSVAGRVIVRGSDGSFLH
KLVKIKRPLLRIPTLAIHLDRTVNKDGFKPNLETHLIPLLATKSEEGSSETKEKNTESSKAVHHPLLMQVLSDELSCSIDDIVSIELNVCDTQPSCLGGG
NNEFIFSGRLDNLASSYCALRALIDSCESSSDLSNDTAVRMIALFDNEEVGSGSVQGAGAPTMFQAMKRIAGCLALNNVNEGAIERAIRQSFLVSADMAH
GVHPNFMEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEVGKIHNLPSQEFVVRNDMGCGSTIGPILASGAGIRTVDCGIPQLSMHSVREICAKE
DVDIAYKYFKAFYQNFSSIDKKLEVD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04710 Zn-dependent exopeptidases sup... Potri.008G021700
[exp]
0 1
AT1G18490 Protein of unknown function (D... Potri.015G055600
[exp]
2.00 0.9043
AT4G35000 APX3 ascorbate peroxidase 3 (.1) Potri.004G174500
[exp]
12.48 0.9132
AT3G23560 ALF5 ABERRANT LATERAL ROOT FORMATIO... Potri.011G117300
[exp]
17.14 0.8775 Pt-HLS3.1
AT4G36910 CBSX1, CDCP2, L... LOSS OF THE TIMING OF ET AND J... Potri.005G140800
[exp]
42.42 0.9014
Potri.001G027600
[exp]
58.44 0.8737
AT3G50790 esterase/lipase/thioesterase f... Potri.003G146500
[exp]
61.70 0.8846
AT3G03890 FMN binding (.1.2) Potri.019G035200
[exp]
61.87 0.8806
AT1G55280 Lipase/lipooxygenase, PLAT/LH2... Potri.003G218100
[exp]
62.04 0.8867
AT5G08340 Nucleotidylyl transferase supe... Potri.007G075500
[exp]
73.83 0.8890
AT3G01920 DHBP synthase RibB-like alpha/... Potri.001G330100
[exp]
80.41 0.8613

Potri.008G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.