Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20930 427 / 1e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G32580 109 / 1e-27 plastid developmental protein DAG, putative (.1) AT2G33430 106 / 1e-26 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 100 / 2e-24 plastid developmental protein DAG, putative (.1) AT1G73530 89 / 6e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 87 / 2e-20 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 81 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 81 / 2e-18 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 81 / 3e-18 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G11430 83 / 4e-18 plastid developmental protein DAG, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237200 [exp] 587 / 0 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 272 / 5e-92 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G068300 [exp] 105 / 5e-26 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 102 / 3e-25 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.012G038200 [exp] 93 / 2e-22 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 91 / 5e-22 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G032900 [exp] 83 / 3e-18 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.015G057400 [exp] 82 / 7e-18 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 82 / 8e-18 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027035 [exp] 387 / 2e-133 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025573 [exp] 359 / 3e-118 AT3G20930 336 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011789 [exp] 104 / 7e-26 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 104 / 1e-25 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10026364 [exp] 89 / 5e-21 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023758 [exp] 85 / 1e-19 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018398 [exp] 86 / 2e-19 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 86 / 4e-19 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10003980 [exp] 84 / 5e-19 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016639 [exp] 79 / 2e-17 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G022200.2 pacid=42807383 polypeptide=Potri.008G022200.2.p locus=Potri.008G022200 ID=Potri.008G022200.2.v4.1 annot-version=v4.1 ATGGAAACACTCTCTCCTTCATTATCCATCTCCAGTCTCACCTCCATATCCAAGAAACTCCCGGTTAAAGCTTCAAGTTTCAAACTTTACAGCCCTATAA AGAACAAGAACCACATAAAAACCCATTCTTTATCTTCTTCTTCTTCATTCATTTCTTTATCAACAAAAGCCACAACAACATCAACATGTACTCCAACTTC AACTAAAACTAACAAACACTGGATGATTCTAATGGAAAGTCCCCCAAAGGGTGTCAATTCAAAGCCAGAAATCATTGATTACTACGTCAAGACTCTAGAG AGAGTAATAGGCAGTGAGAAGGATGCTCAAATGTGTATGTATGATTCTTCTTGTGACACTCGTTTTGGGTTTTGTTGCGATATTGATGAAGATGCTTCCC TTGAACTTGCCAGGCTGCCTGGGGTTATATCAGTTAGGCCTGACCCGGATTATAATTCCGCGGAAAAAGATTATAGTTTAGGTGTCAGGTTGAGTACATT ATCAAATCCACAAATTGGAAGCAATTTGTTGTTTCCTGCAGGGAATACAAAACATTGGCTGGTTAAAATTGATAAGCCAGCAGTTGGAGTTGTTACAAAG GCACAAATGGTTGATTATCATGATCAAATACTAACCAAGGTCATGGGAAACGAGAAGGATGCTCAAATGTGTATATATCATGTTTCATGGCAATCGAATT TTGGGTTCTGTTGTGAACTTGACGAGGAATGTGCACAGGAGCTAGCTGGTGTCCCTGGTGTTTTATCTGTTCAGCCAGATAAAAATGTTAAGTCAGAAAA CAAGGATTATGGAGGCGATCACATAATCAATTCAGCAGATTCTTCAGAAGCAAGTCAGATAACTCCTGTAAAAACAAAGAAACTTTTTATTACTGGTCTG TCATTTTATACTTCTGAGAAAACCTTGCGCGCAGCATTTGAGGGCTTTGGTGAGCTTGTCGAAGTTAAAATAATAATGGACAAGATTTCTAAGAGGTCCA AGGGATATGCATTTGTAGAGTACACGACAGAGGAGGCTGCAAGTGCAGCCCTCAAGGAGATGAATGGCAAGATCATCAATGGTTGGATGATTGTTGTTGA TGTTGCCAAAAGCAACCCACCAAGATACAGCAGGGGTCAACCAAGACCAACAGCCTGA
AA sequence Show only first row Show all	>Potri.008G022200.2 pacid=42807383 polypeptide=Potri.008G022200.2.p locus=Potri.008G022200 ID=Potri.008G022200.2.v4.1 annot-version=v4.1 METLSPSLSISSLTSISKKLPVKASSFKLYSPIKNKNHIKTHSLSSSSSFISLSTKATTTSTCTPTSTKTNKHWMILMESPPKGVNSKPEIIDYYVKTLE RVIGSEKDAQMCMYDSSCDTRFGFCCDIDEDASLELARLPGVISVRPDPDYNSAEKDYSLGVRLSTLSNPQIGSNLLFPAGNTKHWLVKIDKPAVGVVTK AQMVDYHDQILTKVMGNEKDAQMCIYHVSWQSNFGFCCELDEECAQELAGVPGVLSVQPDKNVKSENKDYGGDHIINSADSSEASQITPVKTKKLFITGL SFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKSNPPRYSRGQPRPTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	0	1
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	1.00	0.9866
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	1.41	0.9755	PtrPHT1-9
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	2.44	0.9699
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	3.16	0.9672
AT4G24090			unknown protein		Potri.001G084500 [exp]	5.65	0.9676
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	7.34	0.9558
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	7.41	0.9595
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	9.53	0.9627
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	10.39	0.9469
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	12.48	0.9580

Compare expression of checked genes

Potri.008G022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.