Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27600 704 / 0 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT1G80350 273 / 2e-86 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 263 / 4e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G45500 259 / 1e-81 AAA-type ATPase family protein (.1.2) AT3G27120 234 / 4e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 209 / 2e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 207 / 1e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 202 / 1e-57 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 201 / 7e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 197 / 9e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G022216 [exp] 891 / 0 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 821 / 0 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 716 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 708 / 0 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G065100 [exp] 268 / 6e-86 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G176900 [exp] 271 / 1e-85 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 270 / 5e-85 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 265 / 9e-85 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G071900 [exp] 249 / 2e-77 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019537 [exp] 716 / 0 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 706 / 0 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 699 / 0 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 679 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10011477 [exp] 275 / 5e-87 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 275 / 6e-87 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 256 / 4e-81 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038001 [exp] 250 / 4e-78 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 249 / 6e-78 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10023310 [exp] 244 / 2e-74 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [poplar] [flax] MIT MIT (microtubule interacting and transport) domain CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0671 [poplar] [flax] AAA_lid PF09336 [poplar] [flax] Vps4_C Vps4 C terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Potri.008G022300.12 pacid=42807225 polypeptide=Potri.008G022300.12.p locus=Potri.008G022300 ID=Potri.008G022300.12.v4.1 annot-version=v4.1 ATGTATTGCAATTTTATGGAGCATGGTATAGAGTACGCGAAACAGGCAGTCAAGGAGGATGATGCTGGAAACTATAGGAAAGCTTTCCAGCTTTATATGA ATGCATTGGAGTATTTTCAAGCACAACTGAAGTATGAGAAGAATCCACAGGTTGAGAAAACAATTAGGCAAAAATGTATGGGGTATCTAAGAAGGGCGGA GGAGATCCGATCTGTTCTTGATAATGGTAGGAGTATGCCAGCGTCAAATGGTGATGCATCGGTTGCTGCACGGCCCAAGACTAGTCCAAAACCAAAGGAT GGAGGTAGGAAGGGCAAGGAGGATCCAGAGCTAGCGAAGCTTAAGGGCGGGCTTGATTCTGTTATCATCAGGGAGAAGCCAAATGTGAAGTGGAGTGATG TGGCAGGTCTTGAGAATGCCAAACTGGCATTGCAGGAAGCTGTTATATTGCCTGTTAAGTTCCCACAGTTTTTCACTGGGAAGAGAAAACCATGGAGGGC ATTTTTGTTATATGGTCCACCTGGTACAGGGAAGTCATACTTGGCAAAGGCTGTTGCAACAGAAGCTGACTCAACTTTCTTCAGTGTTTCTTCCTCAGAC CTGGTTTCCAAATGGATGGGTGAAAGTGAGAAGCTAGTTTCAAATCTTTTCCAAATGGCTCGTGATAAAGCACCTTCCATCATTTTCATTGACGAAATAG ATTCACTTTGTGGCCAACGGGGTGAATGTAACGAGAGTGAAGCATCTCGTCGCATCAAAACAGAACTTCTTGTACAGATGCAGGGTATAGGGAATGATGA TCAGAAGGTTCTTGTTCTTGCAGCCACAAATACTCCCTATGCACTGGATCAGGCTATCCGGCGGCGTTTTGACAAGAGAATATACATTCCTCTCCCAGAT TTGAAGGCAAGGCAACACATGTTTAAGGTGCATCTTGGAGATACTCCTCATGATTTAACTGAAAGAGATTTTGAAAAGTTGGCTCGAAAAACAGAAGGTT TTTCAGGTTCAGATATTTCTGTTTGTGTTAAGGATGTGCTCTTTGAACCTGTTCGTAAAACCCGGGATGCGGAATATTTCATTAAATCCTCTGATGGCAT GTGGGTTCCTTGTGAACTACAACGAGTAGCTGTCAAGACTACACTACAAGAACTTGATGCACAAGGACTTGCTTCAAAGGTCCTTCCACCACCCATCACA AGAGCAGATTTCAACAAAGTGCTTGCACGGCAGAAGCCAACAGTGAGTAAAGCTGATCTTGAGGTGCATGAGAGATTCACAAAGGAGTTTGGAGAAGAGG GCTGA
AA sequence Show only first row Show all	>Potri.008G022300.12 pacid=42807225 polypeptide=Potri.008G022300.12.p locus=Potri.008G022300 ID=Potri.008G022300.12.v4.1 annot-version=v4.1 MYCNFMEHGIEYAKQAVKEDDAGNYRKAFQLYMNALEYFQAQLKYEKNPQVEKTIRQKCMGYLRRAEEIRSVLDNGRSMPASNGDASVAARPKTSPKPKD GGRKGKEDPELAKLKGGLDSVIIREKPNVKWSDVAGLENAKLALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSD LVSKWMGESEKLVSNLFQMARDKAPSIIFIDEIDSLCGQRGECNESEASRRIKTELLVQMQGIGNDDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPD LKARQHMFKVHLGDTPHDLTERDFEKLARKTEGFSGSDISVCVKDVLFEPVRKTRDAEYFIKSSDGMWVPCELQRVAVKTTLQELDAQGLASKVLPPPIT RADFNKVLARQKPTVSKADLEVHERFTKEFGEEG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022300 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022216 [exp]	1.00	0.8534
AT2G32415			Polynucleotidyl transferase, r...		Potri.002G229000 [exp]	7.07	0.7520
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	9.38	0.7979	Pt-KICP.1
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Potri.010G152200 [exp]	21.90	0.7724
AT3G28430			unknown protein		Potri.018G140800 [exp]	22.71	0.7726
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	24.00	0.7126
AT5G62760			P-loop containing nucleoside t...		Potri.015G064600 [exp]	25.21	0.7436
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	25.78	0.6810
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.013G008600 [exp]	27.65	0.7565
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	28.19	0.7741

Compare expression of checked genes

Potri.008G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.