Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52870 294 / 7e-97 IQ calmodulin-binding motif family protein (.1) AT3G58480 208 / 2e-62 calmodulin-binding family protein (.1) AT3G13600 169 / 1e-47 calmodulin-binding family protein (.1) AT5G57010 164 / 3e-46 calmodulin-binding family protein (.1) AT2G26190 157 / 8e-44 calmodulin-binding family protein (.1) AT4G33050 154 / 5e-43 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114700 [exp] 319 / 3e-106 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.016G034100 [exp] 216 / 4e-67 AT3G52870 367 / 3e-124 IQ calmodulin-binding motif family protein (.1) Potri.001G006200 [exp] 216 / 5e-65 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 216 / 1e-64 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 206 / 7e-62 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 200 / 2e-59 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G226500 [exp] 192 / 1e-58 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 192 / 1e-56 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G197500 [exp] 194 / 2e-56 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003257 [exp] 309 / 6e-103 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 306 / 7e-101 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10016052 [exp] 220 / 4e-67 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 220 / 5e-67 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 216 / 4e-65 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 208 / 4e-62 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 174 / 1e-49 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10029324 [exp] 168 / 3e-48 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 170 / 7e-48 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 166 / 1e-46 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G023866.2 pacid=42808239 polypeptide=Potri.008G023866.2.p locus=Potri.008G023866 ID=Potri.008G023866.2.v4.1 annot-version=v4.1 ATGGGATCCCCACTTCCTGTTATGAGCATTCTGCATTGTTCAGGGAAATTTTGCTCTTTGCTGTTACTAAAATGCTGTATCTTTCTGCTTGGTTTCAGGC TGGATATTGGAGATGGTAAAGAAATTGATCTCAAAGACTGTCCAAGAACAAGACTTTGCCAAGAATGCATTCAGTATCTAGGACCGCAAGAGAGAGAACT GTATGAATACATCATTGCTGAAGGAACAGTGGTGCACAAACAAAATGGCAACCTCCTAGATACAAATCAAGGATTGGAAGGTTCAAAATGGATATTCGTG ATGAGCACCTGCAGAAAACTAAATGCTGGAGAGAAAAAGAAAGGAGCATTTCATCACTCGAGCTTCCTTGCTGGAGGGACTACTCTGGCTGCTGGGAGAC TAACAGCAGAAAATGGAAAGCTCAGGTCTATATCAGCATATAGTGGGCATTACCGTCCAACTAACCAGAACCTTGGCGGCTTCTTGGCCTTCCTCGAAGA AAATGGGATCAACCTCAATGAAATTCGGGTTCTTACACCAGAAGATAGTGAAAGCTGTGAATCAAGGGAATTGTCTCAAGACAGAAGTAAATTTGGTTGG TCAATGGATTCGAAGCCGTCTAAACTTCATGCTTCGAGTAAAATTAACAATTACCAACCTTCTGAATCATCCATGTCTTCACAAGCCACAAGAACATGCA GTTACAAGAGGATGTTGTCGGCCAATATCCAGAACACAAAAGCAAATGTACCAAAGAAGGAAATATTGCAGAGGATCAAATCCAAGAACGAAGCTAGCTC ATACCAATTAGGGCACCAACTGTCTTTGAAATGGTCAACTGGAGCTGGTCCGAGAATCGGGTGTGTTGCAGACTATCCTCTGAAACTAAGGGAGCAAGCT CTCACGTTTGTTTACCTCTCATCCAGTGATGATCTGCGCAAGCCATCTGCTTCTGAACTTCCAGGTTGCCTGCTCTCTATAATAGATCTTTGTAGGATGA TGTAA
AA sequence Show only first row Show all	>Potri.008G023866.2 pacid=42808239 polypeptide=Potri.008G023866.2.p locus=Potri.008G023866 ID=Potri.008G023866.2.v4.1 annot-version=v4.1 MGSPLPVMSILHCSGKFCSLLLLKCCIFLLGFRLDIGDGKEIDLKDCPRTRLCQECIQYLGPQERELYEYIIAEGTVVHKQNGNLLDTNQGLEGSKWIFV MSTCRKLNAGEKKKGAFHHSSFLAGGTTLAAGRLTAENGKLRSISAYSGHYRPTNQNLGGFLAFLEENGINLNEIRVLTPEDSESCESRELSQDRSKFGW SMDSKPSKLHASSKINNYQPSESSMSSQATRTCSYKRMLSANIQNTKANVPKKEILQRIKSKNEASSYQLGHQLSLKWSTGAGPRIGCVADYPLKLREQA LTFVYLSSSDDLRKPSASELPGCLLSIIDLCRMM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	2.44	0.8869
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	8.24	0.8594
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	8.66	0.8381
AT3G24460			Serinc-domain containing serin...		Potri.018G076000 [exp]	9.00	0.8472
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	10.95	0.8355
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	11.22	0.8364	VLN1.1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.001G018700 [exp]	11.40	0.8238
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	16.61	0.8396
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	19.33	0.8029
AT1G09812			unknown protein		Potri.004G224200 [exp]	23.68	0.8265

Compare expression of checked genes

Potri.008G023866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.