Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) AT5G47750 405 / 7e-137 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 397 / 1e-134 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G40030 396 / 2e-134 Protein kinase superfamily protein (.1) AT1G79250 396 / 1e-133 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 394 / 2e-132 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G55910 388 / 3e-131 D6PK D6 protein kinase (.1) AT3G27580 387 / 1e-129 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT2G44830 389 / 4e-128 Protein kinase superfamily protein (.1) AT1G16440 378 / 2e-127 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236200 [exp] 733 / 0 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.004G186200 [exp] 519 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 518 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 410 / 2e-138 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 408 / 1e-137 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 404 / 2e-134 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 409 / 9e-134 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 405 / 2e-133 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 404 / 5e-133 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043435 [exp] 533 / 0 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10006272 [exp] 529 / 0 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 525 / 0 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 407 / 2e-137 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 406 / 4e-137 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 403 / 7e-137 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 403 / 1e-135 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10020571 [exp] 395 / 3e-131 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 400 / 4e-131 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 400 / 8e-131 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G024000.1 pacid=42808783 polypeptide=Potri.008G024000.1.p locus=Potri.008G024000 ID=Potri.008G024000.1.v4.1 annot-version=v4.1 ATGGAGCCAGTTGTGGAAGATCTAACCGATGATCTAGATAATCTTAGTTTAGCTTCCACCACCACCACCACCACTGCTGCCGAGACACGACACAGCACAG GTTCAGGGTCCGAAACCACATGGACTACCTCAACCTCGAGCCTCGTGTCAAACTCCTGCAAGCCCCATCATCCGCCTCAATGTGATCAGTGTTGGCATGC AATCCAACGTGACAACTGCGATAACTCACCCCTAACCCTAGCTGATTTACGCTTTGTCCACAAATTAGGAAGTGGTGACATAGGGAGTGTGTATCTTGTA GAGCTCAAGGAAGGCAACGGGTGCCTTTTTGCTGCCAAAGTCATGGACAAAAAAGAAATGGCCACTAGGAATAAAGATAGTAGGGCTAGAATTGAGAGGG AAATATTAGAAATGTTGGAGCATCCATTTTTGCCTACATTGTATGCCACATTGGACTCGCCCAGGCGGTCTTGTTTGTTAACGGAGTTTTGTCCTGGCGG TGACCTCCATGTCCTCCGGCAACAGCAACCTGAGAGACGTTTCGGCGAAGCTGCCATCCGGTTCTATGCGTCAGAGGTTGTGGCTGCTCTTGAATACTTG CACATGATGGGAATAGTCTACCGTGACCTCAAGCCTGAAAATGTTCTTGTAAGATCAGACGGTCACATAATGCTTACAGATTTTGATCTCTCCTTGAAGG ACGATAACTCACCGTCAACAGCTCAGATTATCTCCGATCAAAACCAGCCAACCACAGCTTCATCAACAAGAGACTACCCTTCTGATACATCTCAATTTGC CACATCATCATGTATTCTACCCAGTTGTATTGTGCCAGCTGTCTCTTGCTTCCACCATAGGAGAAAACGCAAGAAGAAACTCCATCAACGCGGGACCCTC GAGATAGTAGCAGAGCCAATAGACGTCCGATCCATGTCGTTTGTTGGGACCCATGAGTACTTGGCACCGGAGATTGTGTCCGGCGAGGGACACGGCAACG CAGTGGATTGGTGGACCTTAGGCATATTCATGTTTGAAATGTTCTACGGCGTTACACCATTCAAAGGGATGGACCATGAGTTAACCCTAGCAAACATTGT GGCTCGAGCCCTTGAATTCCCCAAGGAACCCTCAATTCCAGTCCTCGCGAAGGACTTGATCACCCAACTTCTCATCAAAGATCCCGTAAGACGACTGGGT TCTACCATGGGAGCTACAGCCATCAAACACCATCAGTTTTTTGACGGGATAAACTGGGCACTGCTAAGGTGTAGAACACCACCTTATATTCCTCGACCGG TCACTTATAAAAACCTTGTTGTGGCAGAACATGGGAATAATTCTATAGAGTATTATTAG
AA sequence Show only first row Show all	>Potri.008G024000.1 pacid=42808783 polypeptide=Potri.008G024000.1.p locus=Potri.008G024000 ID=Potri.008G024000.1.v4.1 annot-version=v4.1 MEPVVEDLTDDLDNLSLASTTTTTTAAETRHSTGSGSETTWTTSTSSLVSNSCKPHHPPQCDQCWHAIQRDNCDNSPLTLADLRFVHKLGSGDIGSVYLV ELKEGNGCLFAAKVMDKKEMATRNKDSRARIEREILEMLEHPFLPTLYATLDSPRRSCLLTEFCPGGDLHVLRQQQPERRFGEAAIRFYASEVVAALEYL HMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKDDNSPSTAQIISDQNQPTTASSTRDYPSDTSQFATSSCILPSCIVPAVSCFHHRRKRKKKLHQRGTL EIVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLGIFMFEMFYGVTPFKGMDHELTLANIVARALEFPKEPSIPVLAKDLITQLLIKDPVRRLG STMGATAIKHHQFFDGINWALLRCRTPPYIPRPVTYKNLVVAEHGNNSIEYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	0	1
AT3G05910			Pectinacetylesterase family pr...		Potri.013G000900 [exp]	1.41	0.9544
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	1.73	0.9587
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.010G088300 [exp]	2.23	0.9457
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	2.82	0.9480
AT5G51560			Leucine-rich repeat protein ki...		Potri.015G130100 [exp]	3.00	0.9386
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G035100 [exp]	4.58	0.9187
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.018G096007 [exp]	5.47	0.9435
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	5.74	0.9503
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	8.48	0.9347	PtrAUX8
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	9.89	0.9312

Compare expression of checked genes

Potri.008G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.