Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22510 894 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 756 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 744 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 741 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT4G09510 593 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 590 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G34860 575 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G22650 574 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G72000 561 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236100 [exp] 1175 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 912 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 756 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 739 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 738 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G110800 [exp] 579 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.009G129000 [exp] 578 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 578 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 575 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043375 [exp] 898 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 895 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10010900 [exp] 744 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10031431 [exp] 742 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10037817 [exp] 738 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 737 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10033144 [exp] 591 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 589 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 580 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 580 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF12899 [poplar] [flax] Glyco_hydro_100 Alkaline and neutral invertase
Representative CDS sequence Show only first row Show all	>Potri.008G024100.2 pacid=42808761 polypeptide=Potri.008G024100.2.p locus=Potri.008G024100 ID=Potri.008G024100.2.v4.1 annot-version=v4.1 ATGGCGACTTCGGATGCAGTTCTGCAAGTTTTGTCTGGGGCTGGTCCTCGCAGTTTCAGTTCTGACCTTTGTTTTAACAATTTAGATTTGGCATTCCGTT CTAAGCATATAAAATATGTAAAGAAAAGGGCCTCAAGGCATATGAAAATGCTCGAGTGTTCGAGTGTTCAGCAGAATTGTATAGGAAAACATTGGTTTAA GAGATCAGGTGACGGTGATCTGTCTGTGAATGCAACGATCAAGAGACTGCAGCTTCTGAGGTGCAAATGCCAGAAGGCAGAAAGAGTTAGTGGTGTAACT ACAGAAGGAGGAAATGGAACATGGTTTGTAGATAGTGCAAAGACGTTAAACCTGAATGGGGCGGTGAACACACCGGGTGTATTGGAGCTTGGGGACACTC AACAGTTGATGCGGGAAAAGGAGGTTTTGACATCTAATGGTTCAGCAAATAAGGAAGAGGAGAGTTTGGCAACTAATGGTGCTGTAGGAACAGGTAGAGA TGCCTCTCGCAAGGTTAGTGTAGACCCTACTGAGGAAGAAGCATGGGAGCTACTGCGGGATTCTGTAGTTCATTATTGTGGCAGTCCAATTGGAACGATT GCTGCCAATGATCCCACCAGTTCCAGTGTGTTGAATTATGACCAGGTCTTCATTAGAGACTTCATACCTTCTGGTATTGCTTTTCTTTTGAAGGGAGAAT ATGATATTGTCCGGAACTTCCTCCTTCATACGCTTCAGTTGCAGAGTTGGGAGAAAACAATGGACTGTCACAGTCCTGGACAGGGATTAATGCCTGCTAG TTTCAAGGTGCGCACTTTTCCTTTGGATGGTGATGATTCTGCAACAGAGGAGGTATTGGATCCTGACTTTGGAGAGGCAGCAATTGGCCGTGTTGCACCA GTTGATTCTGGATTATGGTGGATTATCTTGTTACGTGCATATGGGAAATGCTCTGGTGATCTCTCAGTTCAGGAGAGGATCGATGTGCAAACTGGAATTA AGATGATTCTGAGGTTATGTCTTGCTGATGGTTTTGACATGTTCCCAACATTGTTGGTGACAGATGGTTCTTGCATGATAGATCGCAGAATGGGAATTCA TGGGCACCCTCTAGAAATCCAGGCACTCTTTTATTCCGCCTTACTTTGTGCAAAGGAGATGCTCGCCCCAGAGGATGGATCAGCTGATCTCTTACGAGCT TTGAACAATCGTCTAGTAGCTCTGTCGTTCCATATCAGAGAGTATTACTGGATCGATTTAAGAAAATTAAATGAAATTTACCGTTACAAGACTGAAGAGT ACTCTTATGATGCAGTTAATAAGTTCAACATTTACCCAGATCAGGTTTCTCCTTGGTTGGTGGAATGGATGCCCAACCAAGGAGGCTACCTTATTGGAAA CTTGCAACCAGCTCATATGGATTTCCGATTCTTTTCTCTTGGAAACATATGGTCTGTTGTAAGTGGTCTTGCAACAAGAGATCAGTCAAATGCGATATTG GATCTCATTGAAGCCAAGTGGTCAGATTTGGTAGCAGACATGCCATTGAAGATTTGCTATCCAGCTCTTGAAGGTCAGGAGTGGCAAATTATCACTGGAA GTGATCCTAAGAACACGCCTTGGTCTTACCACAATGCAGGTTCCTGGCCAACTCTTCTGTGGCAGCTGACAGTTGCATGCATAAAGATGAATAGACCAGA AATAGCAGCAAGAGCAGTCGATATTGCTGAGAAACGCATATCAAGAGACAAATGGCCTGAATATTATGACACCAAAAAGGCAAGGTTCATTGGAAAACAA GCACGCCTGTTCCAGACATGGTCCATTGCTGGATACCTTGTGGCTAAGCTCTTGCTTGCAGACCCAAGTGCAGCCAGGATGCTCGTAACTGATGAAGATC CTGAGCTTGTCAATGCCTTCTCCTGCATGATCAGTTCTAATCCAAGGAGAAAGCGTGGTCAGAAGAATTCGAAAAAGCCATTCATAGTATGA
AA sequence Show only first row Show all	>Potri.008G024100.2 pacid=42808761 polypeptide=Potri.008G024100.2.p locus=Potri.008G024100 ID=Potri.008G024100.2.v4.1 annot-version=v4.1 MATSDAVLQVLSGAGPRSFSSDLCFNNLDLAFRSKHIKYVKKRASRHMKMLECSSVQQNCIGKHWFKRSGDGDLSVNATIKRLQLLRCKCQKAERVSGVT TEGGNGTWFVDSAKTLNLNGAVNTPGVLELGDTQQLMREKEVLTSNGSANKEEESLATNGAVGTGRDASRKVSVDPTEEEAWELLRDSVVHYCGSPIGTI AANDPTSSSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFLLHTLQLQSWEKTMDCHSPGQGLMPASFKVRTFPLDGDDSATEEVLDPDFGEAAIGRVAP VDSGLWWIILLRAYGKCSGDLSVQERIDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAKEMLAPEDGSADLLRA LNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQVSPWLVEWMPNQGGYLIGNLQPAHMDFRFFSLGNIWSVVSGLATRDQSNAIL DLIEAKWSDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTVACIKMNRPEIAARAVDIAEKRISRDKWPEYYDTKKARFIGKQ ARLFQTWSIAGYLVAKLLLADPSAARMLVTDEDPELVNAFSCMISSNPRRKRGQKNSKKPFIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221700 [exp]	3.00	0.8923
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.019G031900 [exp]	3.74	0.8741
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177700 [exp]	5.47	0.8848	ENOD8.3
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	6.00	0.8460
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	9.27	0.8883
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	9.38	0.8809
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	9.74	0.8455
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	16.12	0.8649
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	16.24	0.8644
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	18.11	0.8242

Compare expression of checked genes

Potri.008G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.